PGen: large-scale genomic variations analysis workflow and browser in SoyKB

被引:0
作者
Yang Liu
Saad M. Khan
Juexin Wang
Mats Rynge
Yuanxun Zhang
Shuai Zeng
Shiyuan Chen
Joao V. Maldonado dos Santos
Babu Valliyodan
Prasad P. Calyam
Nirav Merchant
Henry T. Nguyen
Dong Xu
Trupti Joshi
机构
[1] University of Missouri,Informatics Institute
[2] University of Missouri,Christopher S. Bond Life Sciences Center
[3] University of Missouri,Department of Computer Science
[4] University of Southern California,Information Sciences Institute
[5] University of Missouri,Division of Plant Sciences
[6] National Center of Soybean Biotechnology,iPlant Collaborative
[7] University of Arizona,Department of Molecular Microbiology and Immunology and Office of Research, School of Medicine
[8] University of Missouri,undefined
来源
BMC Bioinformatics | / 17卷
关键词
Cloud Storage; Soybean Line; Stampede; Copy Number Variation Analysis; Biological User;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 232 条
[1]  
Zhou Z(2015)Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean Nat Biotechnol 33 408-14
[2]  
Jiang Y(2015)Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection PLoS One 10 e0124617-60
[3]  
Wang Z(2016)Landscape of genomic diversity and trait discovery in soybean Sci Rep 6 23598-303
[4]  
Gou Z(2009)Fast and accurate short read alignment with burrows wheeler transform Bioinformatics 25 1754-37
[5]  
Lyu J(2010)The genome analysis toolkit: a MapReduce framework for analyzing next-generation dna sequencing data Genome Res 20 1297-83
[6]  
Li W(2005)Pegasus: A framework for mapping complex scientific workflows onto distributed systems Sci Program 13 219-86
[7]  
Yu Y(2012)Soybean knowledge base (SoyKB): a web resource for soybean translational genomics BMC Genomics 13 1-92
[8]  
Shu L(2010)Genome sequence of the palaeopolyploid soybean Nature 463 178-74
[9]  
Zhao Y(2012)Phytozome: a comparative platform for green plant genomics Nucleic Acids Res 40 1178-20
[10]  
Ma Y(2011)The iplant collaborative: cyberinfrastructure for plant biology Frontiers in plant science 2 34-undefined