TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

被引:0
作者
Wei Su
Jianqiang Sun
Kentaro Shimizu
Koji Kadota
机构
[1] The University of Tokyo,Graduate School of Agricultural and Life Sciences
[2] The University of Tokyo,Collaborative Research Institute for Innovative Microbiology
来源
BMC Research Notes | / 12卷
关键词
RNA-Seq; Bioinformatics; Differential expression analysis; Shiny app;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
[31]   NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data [J].
Yingtao Bi ;
Ramana V Davuluri .
BMC Bioinformatics, 14
[32]   Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data [J].
Osabe, Takayuki ;
Shimizu, Kentaro ;
Kadota, Koji .
BMC BIOINFORMATICS, 2021, 22 (01)
[33]   Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data [J].
Li, Chung-I ;
Shyr, Yu .
STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2016, 15 (06) :491-505
[34]   Estimation of gene co-expression from RNA-Seq count data [J].
Specht, Alicia T. ;
Li, Jun .
STATISTICS AND ITS INTERFACE, 2015, 8 (04) :507-515
[35]   Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data [J].
Osabe, Takayuki ;
Shimizu, Kentaro ;
Kadota, Koji .
BIOINFORMATICS AND BIOLOGY INSIGHTS, 2019, 13
[36]   A Semi-parametric Bayesian Approach for Differential Expression Analysis of RNA-seq Data [J].
Fangfang Liu ;
Chong Wang ;
Peng Liu .
Journal of Agricultural, Biological, and Environmental Statistics, 2015, 20 :555-576
[37]   A Semi-parametric Bayesian Approach for Differential Expression Analysis of RNA-seq Data [J].
Liu, Fangfang ;
Wang, Chong ;
Liu, Peng .
JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS, 2015, 20 (04) :555-576
[38]   Detecting differential expression from RNA-seq data with expression measurement uncertainty [J].
Li Zhang ;
Songcan Chen ;
Xuejun Liu .
Frontiers of Computer Science, 2015, 9 :652-663
[39]   Detecting differential expression from RNA-seq data with expression measurement uncertainty [J].
Zhang, Li ;
Chen, Songcan ;
Liu, Xuejun .
FRONTIERS OF COMPUTER SCIENCE, 2015, 9 (04) :652-663
[40]   A general workflow for differential expression analysis of RNA-seq and introductions on related tools [J].
Zhang, Zhong .
PROCEEDINGS OF THE 2016 4TH INTERNATIONAL CONFERENCE ON ELECTRICAL & ELECTRONICS ENGINEERING AND COMPUTER SCIENCE (ICEEECS 2016), 2016, 50 :328-338