Base excision repair: The long and short of it

被引:473
作者
Robertson A.B. [1 ]
Klungland A. [1 ]
Rognes T. [1 ,2 ]
Leiros I. [3 ]
机构
[1] Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo
[2] Department of Informatics, University of Oslo, 0316 Oslo, Blindern
[3] Norwegian Structural Biology Centre (NorStruct), Department of Chemistry, University of Tromsø
关键词
Alkylation; Base excision repair; Deamination; DNA damage; Glycosylase; Oxidation;
D O I
10.1007/s00018-009-8736-z
中图分类号
学科分类号
摘要
Base excision repair (BER) is the primary DNA repair pathway that corrects base lesions that arise due to oxidative, alkylation, deamination, and depurinatiation/depyrimidination damage. BER facilitates the repair of damaged DNA via two general pathways - short-patch and long-patch. The shortpatch BER pathway leads to a repair tract of a single nucleotide. Alternatively, the long-patch BER pathway produces a repair tract of at least two nucleotides. The BER pathway is initiated by one of many DNA glycosylases, which recognize and catalyze the removal of damaged bases. The completion of the BER pathway is accomplished by the coordinated action of at least three additional enzymes. These downstream enzymes carry out strand incision, gap-filling and ligation. The high degree of BER conservation between E. coli and mammals has lead to advances in our understanding of mammalian BER. This review will provide a general overview of the mammalian BER pathway. (Part of a Multi-author Review). © 2009 Birkhäuser Verlag.
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页码:981 / 993
页数:12
相关论文
共 81 条
[71]  
Rada C., Jarvis J.M., Milstein C., AID-GFP chimeric protein increases hypermutation of Ig genes with no evidence of nuclear localization, Proc. Natl. Acad. Sci. USA, 99, pp. 7003-7008, (2002)
[72]  
Imai K., Slupphaug G., Lee W.I., Revy P., Nonoyama S., Catalan N., Yel L., Forveille M., Kavli B., Krokan H.E., Et al., Human uracil-DNA glycosylase deficiency associated with profoundly impaired immunoglobulin class-switch recombination, Nat. Immunol, 4, pp. 1023-1028, (2003)
[73]  
Minowa O., Arai T., Hirano M., Monden Y., Nakai S., Fukuda M., Itoh M., Takano H., Hippou Y., Aburatani H., Et al., Mmh/Ogg1 gene inactivation results in accumulation of 8-hydroxyguanine in mice, Proc. Natl. Acad. Sci. USA, 97, pp. 4156-4161, (2000)
[74]  
Xie Y., Yang H., Cunanan C., Okamoto K., Shibata D., Pan J., Barnes D.E., Lindahl T., McIlhatton M., Fishel R., Et al., Deficiencies in mouse Myh and Ogg1 result in tumor predisposition and G to T mutations in codon 12 of the K-ras oncogene in lung tumors, Cancer Res, 64, pp. 3096-3102, (2004)
[75]  
Michaels M.L., Cruz C., Grollman A.P., Miller J.H., Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA, Proc. Natl. Acad. Sci. USA, 89, pp. 7022-7025, (1992)
[76]  
Elder R.H., Jansen J.G., Weeks R.J., Willington M.A., Deans B., Watson A.J., Mynett K.J., Bailey J.A., Cooper D.P., Rafferty J.A., Et al., Alkylpurine-DNA-N-glycosylase knockout mice show increased susceptibility to induction of mutations by methyl methanesulfonate, Mol. Cell Biol, 18, pp. 5828-5837, (1998)
[77]  
Engelward B.P., Dreslin A., Christensen J., Huszar D., Kurahara C., Samson L., Repair-deficient 3-methyladenine DNA glycosylase homozygous mutant mouse cells have increased sensitivity to alkylation-induced chromosome damage and cell killing, EMBO J, 15, pp. 945-952, (1996)
[78]  
Prasad A., Wallace S.S., Pederson D.S., Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1, Mol. Cell Biol, 27, pp. 8442-8453, (2007)
[79]  
Beard B.C., Wilson S.H., Smerdon M.J., Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes, Proc. Natl. Acad. Sci. USA, 100, pp. 7465-7470, (2003)
[80]  
Mostoslavsky R., Chua K.F., Lombard D.B., Pang W.W., Fischer M.R., Gellon L., Liu P., Mostoslavsky G., Franco S., Murphy M.M., Et al., Genomic instability and aging-like phenotype in the absence of mammalian SIRT6, Cell, 124, pp. 315-329, (2006)