LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis

[21] Earl AM(2014)Swarm: robust and fast clustering method for amplicon-based studies PeerJ. 2 e593-618

[22] Feldgarden M(2016)VSEARCH: a versatile open source tool for metagenomics PeerJ. 2016 1-5277

[23] Ward DV(2018)Minimap2: pairwise alignment for nucleotide sequences Bioinformatics. 34 3094-780

[24] Giannoukos G(2008)Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers Nucleic Acids Res 36 e120-274

[25] Lee ZM-P(2014)Lambda: the local aligner for massive biological data Bioinformatics. 30 i349-7

[26] Bussema C(2010)Search and clustering orders of magnitude faster than BLAST Bioinformatics 26 2460-2595

[27] Schmidt TM(2014)The SILVA and “all-species living tree project (LTP)” taxonomic frameworks Nucleic Acids Res 42 D643-782

[28] Quince C(2012)An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea ISME J 6 610-123

[29] Lanzen A(2015)Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database BMC Genomics 16 1056-undefined

[30] Davenport RJ(2013)Towards a unified paradigm for sequence-based identification of fungi Mol Ecol 22 5271-undefined

[21] Earl AM(2014)Swarm: robust and fast clustering method for amplicon-based studies PeerJ. 2 e593-618

[22] Feldgarden M(2016)VSEARCH: a versatile open source tool for metagenomics PeerJ. 2016 1-5277

[23] Ward DV(2018)Minimap2: pairwise alignment for nucleotide sequences Bioinformatics. 34 3094-780

[24] Giannoukos G(2008)Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers Nucleic Acids Res 36 e120-274

[25] Lee ZM-P(2014)Lambda: the local aligner for massive biological data Bioinformatics. 30 i349-7

[26] Bussema C(2010)Search and clustering orders of magnitude faster than BLAST Bioinformatics 26 2460-2595

[27] Schmidt TM(2014)The SILVA and “all-species living tree project (LTP)” taxonomic frameworks Nucleic Acids Res 42 D643-782

[28] Quince C(2012)An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea ISME J 6 610-123

[29] Lanzen A(2015)Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database BMC Genomics 16 1056-undefined

[30] Davenport RJ(2013)Towards a unified paradigm for sequence-based identification of fungi Mol Ecol 22 5271-undefined