Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data

被引：0
|
作者：
Chin Lui Goi
Peter Little
Chao Xie
机构：
[1] National University of Singapore,Department of Biochemistry, Yong Loo Lin School of Medicine
[2] National University of Singapore,Life Sciences Institute
[3] Singapore Centre on Environmental Life Sciences Engineering (SCELSE) Nanyang Technological University 60 Nanyang Drive,undefined
来源：
BMC Genomics | / 14卷
关键词：
Transcription Factor Binding Site; Motif Enrichment; Binding Site Motif; Cofactor Binding Site; Canonical Motif;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data
    Goi, Chin Lui
    Little, Peter
    Xie, Chao
    BMC GENOMICS, 2013, 14
  • [2] Systematic discovery of cofactor motifs from ChIP-seq data by SIOMICS
    Ding, Jun
    Dhillon, Vikram
    Li, Xiaoman
    Hu, Haiyan
    METHODS, 2015, 79-80 : 47 - 51
  • [3] FROM BINDING MOTIFS IN CHIP-SEQ DATA TO IMPROVED MODELS OF TRANSCRIPTION FACTOR BINDING SITES
    Kulakovskiy, Ivan
    Levitsky, Victor
    Oshchepkov, Dmitry
    Bryzgalov, Leonid
    Vorontsov, Ilya
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2013, 11 (01)
  • [4] Extracting transcription factor targets from ChIP-Seq data
    Tuteja, Geetu
    White, Peter
    Schug, Jonathan
    Kaestner, Klaus H.
    NUCLEIC ACIDS RESEARCH, 2009, 37 (17) : e113 - e113
  • [5] Inferring transcription factor complexes from ChIP-seq data
    Whitington, Tom
    Frith, Martin C.
    Johnson, James
    Bailey, Timothy L.
    NUCLEIC ACIDS RESEARCH, 2011, 39 (15) : e98
  • [6] DREME: motif discovery in transcription factor ChIP-seq data
    Bailey, Timothy L.
    BIOINFORMATICS, 2011, 27 (12) : 1653 - 1659
  • [7] Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment
    Rebecca Worsley Hunt
    Anthony Mathelier
    Luis del Peso
    Wyeth W Wasserman
    BMC Genomics, 15
  • [8] Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment
    Hunt, Rebecca Worsley
    Mathelier, Anthony
    del Peso, Luis
    Wasserman, Wyeth W.
    BMC GENOMICS, 2014, 15
  • [9] CISMAPPER: predicting regulatory interactions from transcription factor ChIP-seq data
    O'Connor, Timothy
    Boden, Mikael
    Bailey, Timothy L.
    NUCLEIC ACIDS RESEARCH, 2017, 45 (04) : e19
  • [10] On the detection and refinement of transcription factor binding sites using ChIP-Seq data
    Hu, Ming
    Yu, Jindan
    Taylor, Jeremy M. G.
    Chinnaiyan, Arul M.
    Qin, Zhaohui S.
    NUCLEIC ACIDS RESEARCH, 2010, 38 (07) : 2154 - 2167
12345