H3B-8800, an orally available small-molecule splicing modulator, induces lethality in spliceosome-mutant cancers

被引:385
作者
Seiler, Michael [1 ]
Yoshimi, Akihide [2 ]
Darman, Rachel [1 ]
Chan, Betty [1 ]
Keaney, Gregg [1 ]
Thomas, Michael [1 ]
Agrawal, Anant A. [1 ]
Caleb, Benjamin [1 ]
Csibi, Alfredo [1 ]
Sean, Eckley [3 ]
Fekkes, Peter [1 ]
Karr, Craig [1 ]
Klimek, Virginia [4 ]
Lai, George [3 ]
Lee, Linda [1 ]
Kumar, Pavan [1 ]
Lee, Stanley Chun-Wei [2 ]
Liu, Xiang [1 ]
Mackenzie, Crystal [1 ]
Meeske, Carol [1 ]
Mizui, Yoshiharu [1 ]
Padron, Eric [5 ]
Park, Eunice [1 ]
Pazolli, Ermira [1 ]
Peng, Shouyong [1 ]
Prajapati, Sudeep [1 ]
Taylor, Justin [2 ]
Teng, Teng [1 ]
Wang, John [1 ]
Warmuth, Markus [1 ]
Yao, Huilan [1 ]
Yu, Lihua [1 ]
Zhu, Ping [1 ]
Abdel-Wahab, Omar [2 ,4 ]
Smith, Peter G. [1 ]
Buonamici, Silvia [1 ]
机构
[1] H3 Biomed Inc, Cambridge, MA 02139 USA
[2] Mem Sloan Kettering Canc Ctr, Human Oncol & Pathogenesis Program, New York, NY 10021 USA
[3] Eisai Inc, Andover, MA USA
[4] Mem Sloan Kettering Canc Ctr, Dept Med, Leukemia Serv, New York, NY 10021 USA
[5] H Lee Moffitt Canc Ctr & Res Inst, Dept Hematol Malignancies & Immunol Program, Tampa, FL USA
基金
美国国家卫生研究院;
关键词
MUTATIONS; SF3B1; RECOGNITION; MYELODYSPLASIA; EXPRESSION; SELECTION; DATABASE; REVEALS; CAPTURE; PRODUCT;
D O I
10.1038/nm.4493
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Genomic analyses of cancer have identified recurrent point mutations in the RNA splicing factor-encoding genes SF3B1, U2AF1, and SRSF2 that confer an alteration of function(1-6). Cancer cells bearing these mutations are preferentially dependent on wild-type (WT) spliceosome function(7-11), but clinically relevant means to therapeutically target the spliceosome do not currently exist. Here we describe an orally available modulator of the SF3b complex, H3B-8800, which potently and preferentially kills spliceosome-mutant epithelial and hematologic tumor cells. These killing effects of H3B-8800 are due to its direct interaction with the SF3b complex, as evidenced by loss of H3B-8800 activity in drug-resistant cells bearing mutations in genes encoding SF3b components. Although H3B-8800 modulates WT and mutant spliceosome activity, the preferential killing of spliceosome-mutant cells is due to retention of short, GC-rich introns, which are enriched for genes encoding spliceosome components. These data demonstrate the therapeutic potential of splicing modulation in spliceosome-mutant cancers.
引用
收藏
页码:497 / +
页数:15
相关论文
共 41 条
[1]   Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage [J].
Alsafadi, Samar ;
Houy, Alexandre ;
Battistella, Aude ;
Popova, Tatiana ;
Wassef, Michel ;
Henry, Emilie ;
Tirode, Franck ;
Constantinou, Angelos ;
Piperno-Neumann, Sophie ;
Roman-Roman, Sergio ;
Dutertre, Martin ;
Stern, Marc-Henri .
NATURE COMMUNICATIONS, 2016, 7
[2]   Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition [J].
Amit, Maayan ;
Donyo, Maya ;
Hollander, Dror ;
Goren, Amir ;
Kim, Eddo ;
Gelfman, Sahar ;
Lev-Maor, Galit ;
Burstein, David ;
Schwartz, Schraga ;
Postolsky, Benny ;
Pupko, Tal ;
Ast, Gil .
CELL REPORTS, 2012, 1 (05) :543-556
[3]   Genomic analyses identify molecular subtypes of pancreatic cancer [J].
Bailey, Peter ;
Chang, David K. ;
Nones, Katia ;
Johns, Amber L. ;
Patch, Ann-Marie ;
Gingras, Marie-Claude ;
Miller, David K. ;
Christ, Angelika N. ;
Bruxner, Tim J. C. ;
Quinn, Michael C. ;
Nourse, Craig ;
Murtaugh, L. Charles ;
Harliwong, Ivon ;
Idrisoglu, Senel ;
Manning, Suzanne ;
Nourbakhsh, Ehsan ;
Wani, Shivangi ;
Fink, Lynn ;
Holmes, Oliver ;
Chin, Vencssa ;
Anderson, Matthew J. ;
Kazakoff, Stephen ;
Leonard, Conrad ;
Newell, Felicity ;
Waddell, Nick ;
Wood, Scott ;
Xu, Qinying ;
Wilson, Peter J. ;
Cloonan, Nicole ;
Kassahn, Karin S. ;
Taylor, Darrin ;
Quek, Kelly ;
Robertson, Alan ;
Pantano, Lorena ;
Mincarelli, Laura ;
Sanchez, Luis N. ;
Evers, Lisa ;
Wu, Jianmin ;
Pinese, Mark ;
Cowley, Mark J. ;
Jones, Marc D. ;
Colvin, Emily K. ;
Nagrial, Adnan M. ;
Humphrey, Emily S. ;
Chantrill, Lorraine A. ;
Mawson, Amanda ;
Humphris, Jeremy ;
Chou, Angela ;
Pajic, Marina ;
Scarlett, Christopher J. .
NATURE, 2016, 531 (7592) :47-+
[4]   Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion [J].
Barbosa-Morais, NL ;
Carmo-Fonseca, M ;
Aparício, S .
GENOME RESEARCH, 2006, 16 (01) :66-77
[5]   Near-optimal probabilistic RNA-seq quantification [J].
Bray, Nicolas L. ;
Pimentel, Harold ;
Melsted, Pall ;
Pachter, Lior .
NATURE BIOTECHNOLOGY, 2016, 34 (05) :525-527
[6]   Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT) A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology [J].
Cheng, Donavan T. ;
Mitchell, Talia N. ;
Zehir, Ahmet ;
Shah, Ronak H. ;
Benayed, Ryma ;
Syed, Aijazuddin ;
Chandramohan, Raghu ;
Liu, Zhen Yu ;
Won, Helen H. ;
Scott, Sasinya N. ;
Brannon, A. Rose ;
O'Reilly, Catherine ;
Sadowska, Justyna ;
Casanova, Jacklyn ;
Yannes, Angela ;
Hechtman, Jaclyn F. ;
Yao, Jinjuan ;
Song, Wei ;
Ross, Dara S. ;
Oultache, Alifya ;
Dogan, Snjezana ;
Borsu, Laetitia ;
Hameed, Meera ;
Nafa, Khedoudja ;
Arcila, Maria E. ;
Ladanyi, Marc ;
Berger, Michael F. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2015, 17 (03) :251-264
[7]   Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer [J].
Ciriello, Giovanni ;
Gatza, Michael L. ;
Beck, Andrew H. ;
Wilkerson, Matthew D. ;
Rhie, Suhn K. ;
Pastore, Alessandro ;
Zhang, Hailei ;
McLellan, Michael ;
Yau, Christina ;
Kandoth, Cyriac ;
Bowlby, Reanne ;
Shen, Hui ;
Hayat, Sikander ;
Fieldhouse, Robert ;
Lester, Susan C. ;
Tse, Gary M. K. ;
Factor, Rachel E. ;
Collins, Laura C. ;
Allison, Kimberly H. ;
Chen, Yunn-Yi ;
Jensen, Kristin ;
Johnson, Nicole B. ;
Oesterreich, Steffi ;
Mills, Gordon B. ;
Cherniack, Andrew D. ;
Robertson, Gordon ;
Benz, Christopher ;
Sander, Chris ;
Laird, Peter W. ;
Hoadley, Katherine A. ;
King, Tari A. ;
Perou, Charles M. .
CELL, 2015, 163 (02) :506-519
[8]   Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A [J].
Corrionero, Anna ;
Minana, Belen ;
Valcarcel, Juan .
GENES & DEVELOPMENT, 2011, 25 (05) :445-459
[9]   Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations [J].
Cretu, Constantin ;
Schmitzova, Jana ;
Ponce-Salvatierra, Almudena ;
Dybkov, Olexandr ;
De laurentiis, Evelina I. ;
Sharma, Kundan ;
Will, Cindy L. ;
Urlaub, Henning ;
Luehrmann, Reinhard ;
Pena, Vladimir .
MOLECULAR CELL, 2016, 64 (02) :307-319
[10]  
Croft D, 2014, NUCLEIC ACIDS RES, V42, pD472, DOI [10.1093/nar/gkt1102, 10.1093/nar/gkz1031]