The Use of Whole Genome and Next-Generation Sequencing in the Diagnosis of Invasive Fungal Disease

[1] Armstrong AE(2019)Cell-free DNA next-generation sequencing successfully detects infectious pathogens in pediatric oncology and hematopoietic stem cell transplant patients at risk for invasive fungal disease Pediatr Blood Cancer 66 e27734-3742

[2] Rossoff J(2014)PCR in diagnosis of invasive aspergillosis: a meta-analysis of diagnostic performance J Clin Microbiol. 52 3731-102

[3] Hollemon D(2009)Study on invasive fungal infections in immunocompromised patients to present a suitable early diagnostic procedure Int J Infect Dis. 13 97-13

[4] Hong DK(2018)In-host microevolution of Aspergillus fumigatus: a phenotypic and genotypic analysis Fungal Genet Biol 113 1-2000

[5] Muller WJ(2017)Global and Multi-National Prevalence of Fungal Diseases—Estimate Precision Journal of Fungi 3 57-59

[6] Chaudhury S(2012)Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing PLoS One. 7 e50034-1821

[7] Arvanitis M(2017)Genomic and phenotypic variation in morphogenetic networks of two Candida albicans isolates subtends their different pathogenic potential Front Immunol. 8 1997-117

[8] Ziakas PD(2012)Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification Mol Biol Evol. 29 1987-E8E97

[9] Zacharioudakis IM(2017)Harnessing whole genome sequencing in medical mycology Curr Fungal Infect Rep 11 52-e01414

[10] Zervou FN(2008)Revised definitions of invasive fungal disease from the European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) Consensus Group Clin Infect Dis 46 1813-310

[1] Armstrong AE(2019)Cell-free DNA next-generation sequencing successfully detects infectious pathogens in pediatric oncology and hematopoietic stem cell transplant patients at risk for invasive fungal disease Pediatr Blood Cancer 66 e27734-3742

[2] Rossoff J(2014)PCR in diagnosis of invasive aspergillosis: a meta-analysis of diagnostic performance J Clin Microbiol. 52 3731-102

[3] Hollemon D(2009)Study on invasive fungal infections in immunocompromised patients to present a suitable early diagnostic procedure Int J Infect Dis. 13 97-13

[4] Hong DK(2018)In-host microevolution of Aspergillus fumigatus: a phenotypic and genotypic analysis Fungal Genet Biol 113 1-2000

[5] Muller WJ(2017)Global and Multi-National Prevalence of Fungal Diseases—Estimate Precision Journal of Fungi 3 57-59

[6] Chaudhury S(2012)Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing PLoS One. 7 e50034-1821

[7] Arvanitis M(2017)Genomic and phenotypic variation in morphogenetic networks of two Candida albicans isolates subtends their different pathogenic potential Front Immunol. 8 1997-117

[8] Ziakas PD(2012)Microevolution of Cryptococcus neoformans driven by massive tandem gene amplification Mol Biol Evol. 29 1987-E8E97

[9] Zacharioudakis IM(2017)Harnessing whole genome sequencing in medical mycology Curr Fungal Infect Rep 11 52-e01414

[10] Zervou FN(2008)Revised definitions of invasive fungal disease from the European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) Consensus Group Clin Infect Dis 46 1813-310