TIPD: A Probability Distribution-Based Method for Trajectory Inference from Single-Cell RNA-Seq Data

被引:0
作者
Jiang Xie
Yiting Yin
Jiao Wang
机构
[1] Shanghai University,School of Computer Engineering and Science
[2] Shanghai University,School of Life Sciences
来源
Interdisciplinary Sciences: Computational Life Sciences | 2021年 / 13卷
关键词
Single-cell RNA-seq; Cell trajectories; Signalling entropy; Heterogeneous states; Probability distribution; Minimum spanning tree;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
页码:652 / 665
页数:13
相关论文
共 50 条
[21]   Practical Compass of Single-Cell RNA-Seq Analysis [J].
Okada, Hiroyuki ;
Chung, Ung-il ;
Hojo, Hironori .
CURRENT OSTEOPOROSIS REPORTS, 2024, 22 (05) :433-440
[22]   scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data [J].
Qian, Lingwu ;
Fu, Hongjuan ;
Mou, Yunwen ;
Lin, Weixu ;
Ye, Lishan ;
Ji, Guoli .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (15)
[23]   Single-cell RNA-Seq unveils tumor microenvironment [J].
Lee, Hae-Ock ;
Park, Woong-Yang .
BMB REPORTS, 2017, 50 (06) :283-284
[24]   scDrug: From single-cell RNA-seq to drug response prediction [J].
Hsieh, Chiao-Yu ;
Wen, Jian-Hung ;
Lin, Shih-Ming ;
Tseng, Tzu-Yang ;
Huang, Jia-Hsin ;
Huang, Hsuan-Cheng ;
Juan, Hsueh-Fen .
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2023, 21 :150-157
[25]   A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data [J].
Grabski, Isabella N. ;
Irizarry, Rafael A. .
BIOSTATISTICS, 2022, 23 (04) :1150-1164
[26]   Ensemble Classification through Random Projections for Single-Cell RNA-Seq Data [J].
Vrahatis, Aristidis G. ;
Tasoulis, Sotiris K. ;
Georgakopoulos, Spiros V. ;
Plagianakos, Vassilis P. .
INFORMATION, 2020, 11 (11) :1-14
[27]   Feature Selection in Single-Cell RNA-seq Data via a Genetic Algorithm [J].
Chatzilygeroudis, Konstantinos I. ;
Vrahatis, Aristidis G. ;
Tasoulis, Sotiris K. ;
Vrahatis, Michael N. .
LEARNING AND INTELLIGENT OPTIMIZATION, LION 15, 2021, 12931 :66-79
[28]   scReClassify: post hoc cell type classification of single-cell rNA-seq data [J].
Taiyun Kim ;
Kitty Lo ;
Thomas A. Geddes ;
Hani Jieun Kim ;
Jean Yee Hwa Yang ;
Pengyi Yang .
BMC Genomics, 20
[29]   scReClassify: post hoc cell type classification of single-cell rNA-seq data [J].
Kim, Taiyun ;
Lo, Kitty ;
Geddes, Thomas A. ;
Kim, Hani Jieun ;
Yang, Jean Yee Hwa ;
Yang, Pengyi .
BMC GENOMICS, 2019, 20 (Suppl 9)
[30]   Single-cell RNA-seq data clustering: A survey with performance comparison study [J].
Li, Ruiyi ;
Guan, Jihong ;
Zhou, Shuigeng .
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2020, 18 (04)