5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription

被引:0
|
作者
Matthew W Kellinger
Chun-Xiao Song
Jenny Chong
Xing-Yu Lu
Chuan He
Dong Wang
机构
[1] Skaggs School of Pharmacy and Pharmaceutical Sciences,Department of Chemistry and Institute for Biophysical Dynamics
[2] University of California,undefined
[3] San Diego,undefined
[4] La Jolla,undefined
[5] California,undefined
[6] USA.,undefined
[7] University of Chicago,undefined
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
A systematic in vitro analysis of five different forms of cytosine in mammalian and yeast RNA polymerase II (Pol II) transcription demonstrates that Pol II can read and distinguish subtle differences in modified cytosines and process them differently, suggesting a putative functional interplay between cytosine modification status and transcription.
引用
收藏
页码:831 / 833
页数:2
相关论文
共 50 条
  • [21] DNA repair enzymes ALKBH2, ALKBH3, and AlkB oxidize 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in vitro
    Bian, Ke
    Lenz, Stefan A. P.
    Tang, Qi
    Chen, Fangyi
    Qi, Rui
    Jost, Marco
    Drennan, Catherine L.
    Essigmann, John M.
    Wetmore, Stacey D.
    Li, Deyu
    NUCLEIC ACIDS RESEARCH, 2019, 47 (11) : 5522 - 5529
  • [22] Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson-Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine
    Szulik, Marta W.
    Pallan, Pradeep S.
    Nocek, Boguslaw
    Voehler, Markus
    Banerjee, Surajit
    Brooks, Sonja
    Joachimiak, Andrzej
    Egli, Martin
    Eichman, Brandt F.
    Stone, Michael P.
    BIOCHEMISTRY, 2015, 54 (05) : 1294 - 1305
  • [23] Dysregulation and prognostic potential of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) levels in prostate cancer
    Storebjerg, Tine Maj
    Strand, Siri H.
    Hoyer, Soren
    Lynnerup, Anne-Sofie
    Borre, Michael
    Orntoft, Torben F.
    Sorensen, Karina D.
    CLINICAL EPIGENETICS, 2018, 10
  • [24] The existence of 5-hydroxymethylcytosine and 5-formylcytosine in both DNA and RNA in mammals
    Zhang, Hao-Ying
    Xiong, Jun
    Qi, Bao-Ling
    Feng, Yu-Qi
    Yuan, Bi-Feng
    CHEMICAL COMMUNICATIONS, 2016, 52 (04) : 737 - 740
  • [25] Dysregulation and prognostic potential of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) levels in prostate cancer
    Tine Maj Storebjerg
    Siri H. Strand
    Søren Høyer
    Anne-Sofie Lynnerup
    Michael Borre
    Torben F. Ørntoft
    Karina D. Sørensen
    Clinical Epigenetics, 2018, 10
  • [26] Base pairing and structural insights into the 5-formylcytosine in RNA duplex
    Wang, Rui
    Luo, Zhipu
    He, Kaizhang
    Delaney, Michael O.
    Chen, Doris
    Sheng, Jia
    NUCLEIC ACIDS RESEARCH, 2016, 44 (10) : 4968 - 4977
  • [27] Recent Advance in the Study on 5-Formylcytosine (f5C) RNA Modification
    Wang, Xin
    Jin, Xiao-Yang
    Cheng, Liang
    ISRAEL JOURNAL OF CHEMISTRY, 2024, 64 (3-4)
  • [28] Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson-Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine (vol 54, pg 1294, 2015)
    Szulik, Marta W.
    Pallan, Pradeep S.
    Nocek, Boguslaw
    Voehler, Markus
    Banerjee, Surajit
    Brooks, Sonja
    Joachimiak, Andrzej
    Egli, Martin
    Eichman, Brandt F.
    Stone, Michael P.
    BIOCHEMISTRY, 2015, 54 (15) : 2550 - 2550
  • [29] TET1-Mediated Oxidation of 5-Formylcytosine (5fC) to 5-Carboxycytosine (5caC) in RNA
    Basanta-Sanchez, Maria
    Wang, Rui
    Liu, Zhenzhen
    Ye, Xiaohan
    Li, Minyong
    Shi, Xiaodong
    Agris, Paul F.
    Zhou, Yubin
    Huang, Yun
    Sheng, Jia
    CHEMBIOCHEM, 2017, 18 (01) : 72 - 76
  • [30] Accurate quantification of 5-Methylcytosine, 5-Hydroxymethylcytosine, 5-Formylcytosine, and 5-Carboxylcytosine in genomic DNA from breast cancer by chemical derivatization coupled with ultra performance liquid chromatography-electrospray quadrupole time of flight mass spectrometry analysis
    Guo, Mengzhe
    Li, Xiao
    Zhang, Liyan
    Liu, Dantong
    Du, Wencheng
    Yin, Dengyang
    Lyu, Nan
    Zhao, Guangyu
    Guo, Cheng
    Tang, Daoquan
    ONCOTARGET, 2017, 8 (53) : 91248 - 91257