Optimization and expansion of non-negative matrix factorization

被引:0
作者
Xihui Lin
Paul C. Boutros
机构
[1] Informatics & Biocomputing,
[2] Ontario Institute for Cancer Research,undefined
[3] Department of Human Genetics,undefined
[4] University of California,undefined
[5] Jonsson Comprehensive Cancer Center,undefined
[6] University of California,undefined
来源
BMC Bioinformatics | / 21卷
关键词
Non-negative matrix factorization; Deconvolution; Imputation;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 59 条
  • [1] Lee DD(1999)Learning the parts of objects by non-negative matrix factorization Nature 401 899-91
  • [2] Seung HS(2007)Metagenes and molecular pattern discovery using matrix factorization Proc Natl Acad Sci USA 101 4164-89
  • [3] Brunet J-P(2007)Sparse non-negative matrix factorizations via alternating non-negative-constrained least squares for microarray data analysis Bioinformatics 23 1495-502
  • [4] Tamayo P(2013)Deciphering signatures of mutational processes operative in human cancer Nat Genet 3 246-59
  • [5] Golub TR(2005)Sequential Coordinate-wise algorithm for non-negative least squares problem Comput Anal Images Patterns 3691 407-414
  • [6] Mesirov JP(2010)A flexible R package for nonnegative matrix factorization BMC Bioinformatics 11 367-18
  • [7] Kim H(2011)Rcpp: Seamless R and C++ integration J Stat Softw 40 1-204
  • [8] Park H(2013)Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation Clin Cancer Res 19 194-18
  • [9] Alexandrov LB(2012)MissForest - nonparametric missing value imputation for mixed-type data Bioinformatics 28 112-67
  • [10] Nik-Zainal S(2011)BRCA1 protein products: functional motifs J Stat Softw 45 1-10