Picocyanobacterial abundances and diversity in surface water of the northwestern Pacific Ocean

被引:20
作者
Choi D.H. [1 ]
Noh J.H. [2 ]
Hahm M.-S. [2 ]
Lee C.M. [3 ]
机构
[1] Marine Biotechnology Research Department, KORDI, Seoul 425-600
[2] Marine Living Resources Research Department, KORDI, Seoul 425-600
[3] STP Research Department, KORDI, Seoul 425-600
关键词
diversity; East China Sea; Pacific Ocean; Prochlorococcus; Synechococcus;
D O I
10.1007/s12601-011-0020-0
中图分类号
学科分类号
摘要
To understand picocyanobacterial distribution patterns in the northwestern Pacific Ocean, their abundances and genetic diversity were studied using flow cytometry and a barcoded amplicon pyrosequencing approach. At open ocean stations affected by the North Equatorial Current, Prochlorococcus was the predominant picocyanobacteria, and a high-light-adapted ecotype (HLII) made up most of the population. In contrast, at stations in shelf areas of the East China Sea (ECS) and South Sea, Synechococcus was the predominant picocyanobacteria and clade II was dominant. At other ECS stations affected by the Kuroshio Current, both Prochlorococcus and Synechococcus made up similar proportions of the picocyanobacterial community. These results indicate that picocyanobacterial diversity differs among oceanic regions, and that physicochemical properties related to dominant water masses, seem to be important in determining picocyanobacterial diversity. © 2011 Korea Ocean Research & Development Institute (KORDI) and the Korean Society of Oceanography (KSO) and Springer Netherlands.
引用
收藏
页码:265 / 271
页数:6
相关论文
共 29 条
[21]  
Rusch D.B., Martiny A.C., Dupont C.L., Halpern A.L., Venter J.C., Characterization of Prochlorococcus clades from iron-depleted oceanic regions, Proc Natl Acad Sci, 107, pp. 16184-16189, (2010)
[22]  
Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Et al., Introducing Mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl Environ Microbiol, 75, pp. 7537-7541, (2009)
[23]  
Shannon C.E., Weaver W., The Mathematical Theory of Communication, (1949)
[24]  
Somerville C.C., Knight I.T., Straube W.L., Colwell R.R., Simple, rapid method for direct isolation of nucleic acids from aquatic environments, Appl Environ Microbiol, 55, pp. 548-554, (1989)
[25]  
Toledo G., Palenik B., Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains, Appl Environ Microbiol, 63, pp. 4298-4303, (1997)
[26]  
West N.J., Lebaron P., Strutton P.G., Suzuki M.T., A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the south and Equatorial Pacific Ocean, ISME J, 5, pp. 933-944, (2011)
[27]  
Zinser E.R., Coe A., Johnson Z.I., Martiny A.C., Fuller N.J., Scanlan D.J., Chisholm S.W., Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method, Appl Environ Microbiol, 72, pp. 723-732, (2006)
[28]  
Zwirglmaier K., Heywood J.L., Chamberlain K., Woodward E.M.S., Zubkov M.V., Scanlan D.J., Basin-scale distribution patterns lineages in the Atlantic Ocean, Environ Microbiol, 9, pp. 1278-1290, (2007)
[29]  
Zwirglmaier K., Jardillier L., Ostrowski M., Mazard S., Garczarek L., Vaulot D., Et al., Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes, Environ Microbiol, 10, pp. 147-161, (2008)