Getting insight into the pan-genome structure with PangTree

[1] Stein LD(2010)The case for cloud computing in genome informatics Genome Biol 11 207-64

[2] Christopher Lee MFS(2002)Multiple sequence alignment using partial order graphs Bioinformatics 18 452-96

[3] Pevzner PA(2004)De novo repeat classification and fragment assembly Genome Res 14 1786-28

[4] Tang H(2008)Enredo and pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs Genome Res 18 1814-81

[5] Tesler G(2011)Cactus graphs for genome comparisons J Comput Biol 18 469-1008

[6] Paten B(2014)Genome alignment with graph data structures: a comparison BMC Bioinformatics 15 1-92

[7] Herrero J(2003)Generating consensus sequences from partial order multiple sequence alignment graphs Bioinformatics 19 999-46

[8] Beal K(2012)Oases: robust de novo rna-seq assembly across the dynamic range of expression levels Bioinformatics 28 1086-89

[9] Fitzgerald S(2017)Fast and accurate de novo genome assembly from long uncorrected reads Genome Res 27 737-17

[10] Birney E(2014)Alignathon: a competitive assessment of whole-genome alignment methods Genome Res 24 2077-undefined

[1] Stein LD(2010)The case for cloud computing in genome informatics Genome Biol 11 207-64

[2] Christopher Lee MFS(2002)Multiple sequence alignment using partial order graphs Bioinformatics 18 452-96

[3] Pevzner PA(2004)De novo repeat classification and fragment assembly Genome Res 14 1786-28

[4] Tang H(2008)Enredo and pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs Genome Res 18 1814-81

[5] Tesler G(2011)Cactus graphs for genome comparisons J Comput Biol 18 469-1008

[6] Paten B(2014)Genome alignment with graph data structures: a comparison BMC Bioinformatics 15 1-92

[7] Herrero J(2003)Generating consensus sequences from partial order multiple sequence alignment graphs Bioinformatics 19 999-46

[8] Beal K(2012)Oases: robust de novo rna-seq assembly across the dynamic range of expression levels Bioinformatics 28 1086-89

[9] Fitzgerald S(2017)Fast and accurate de novo genome assembly from long uncorrected reads Genome Res 27 737-17

[10] Birney E(2014)Alignathon: a competitive assessment of whole-genome alignment methods Genome Res 24 2077-undefined