Genomic landscape of CpG rich elements in human

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作者
Vladimir N. Babenko
Irina V. Chadaeva
Yuriy L. Orlov
机构
[1] Institute of Cytology and Genetics SB RAS,
[2] Novosibirsk State University,undefined
来源
BMC Evolutionary Biology | / 17卷
关键词
Chromatin State; Open Chromatin; Element Density; Chromatin Accessibility; DNase Hypersensitive Site;
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[31]   Epigenetic landscape change analysis during human EMT sheds light on a key EMT mediator TRIM29 [J].
Choi, Sung Kyung ;
Pandiyan, Kurinji ;
Eun, Jung Woo ;
Yang, Xiaojing ;
Hong, Seong Hwi ;
Nam, Suk Woo ;
Jones, Peter A. ;
Liang, Gangning ;
You, Jueng Soo .
ONCOTARGET, 2017, 8 (58) :98322-98335
[32]   Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors [J].
Kevin Y Yip ;
Chao Cheng ;
Nitin Bhardwaj ;
James B Brown ;
Jing Leng ;
Anshul Kundaje ;
Joel Rozowsky ;
Ewan Birney ;
Peter Bickel ;
Michael Snyder ;
Mark Gerstein .
Genome Biology, 13
[33]   MOCHA's advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts [J].
Rachid Zaim, Samir ;
Pebworth, Mark-Phillip ;
Mcgrath, Imran ;
Okada, Lauren ;
Weiss, Morgan ;
Reading, Julian ;
Czartoski, Julie L. ;
Torgerson, Troy R. ;
McElrath, M. Juliana ;
Bumol, Thomas F. ;
Skene, Peter J. ;
Li, Xiao-jun .
NATURE COMMUNICATIONS, 2024, 15 (01)
[34]   Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors [J].
Yip, Kevin Y. ;
Cheng, Chao ;
Bhardwaj, Nitin ;
Brown, James B. ;
Leng, Jing ;
Kundaje, Anshul ;
Rozowsky, Joel ;
Birney, Ewan ;
Bickel, Peter ;
Snyder, Michael ;
Gerstein, Mark .
GENOME BIOLOGY, 2012, 13 (09)
[35]   Genomic Reorganization of Lamin-Associated Domains in Cardiac Myocytes Is Associated With Differential Gene Expression and DNA Methylation in Human Dilated Cardiomyopathy [J].
Cheedipudi, Sirisha M. ;
Matkovich, Scot J. ;
Coarfa, Cristian ;
Hu, Xin ;
Robertson, Matthew J. ;
Sweet, Mary ;
Taylor, Matthew ;
Mestroni, Luisa ;
Cleveland, Joseph ;
Willerson, James T. ;
Gurha, Priyatansh ;
Marian, Ali J. .
CIRCULATION RESEARCH, 2019, 124 (08) :1198-1213
[36]   Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression [J].
Li, Mulin Jun ;
Yan, Bin ;
Sham, Pak Chung ;
Wang, Junwen .
BRIEFINGS IN BIOINFORMATICS, 2015, 16 (03) :393-412
[37]   Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data [J].
Zheng, Rongbin ;
Dong, Xin ;
Wan, Changxin ;
Shi, Xiaoying ;
Zhang, Xiaoyan ;
Meyer, Clifford A. .
QUANTITATIVE BIOLOGY, 2020, 8 (03) :267-276
[38]   Mapping the epigenomic landscape of human monocytes following innate immune activation reveals context-specific mechanisms driving endotoxin tolerance [J].
Harindra E. Amarasinghe ;
Ping Zhang ;
Justin P. Whalley ;
Alice Allcock ;
Gabriele Migliorini ;
Andrew C. Brown ;
Giuseppe Scozzafava ;
Julian C. Knight .
BMC Genomics, 24
[39]   Mapping the epigenomic landscape of human monocytes following innate immune activation reveals context-specific mechanisms driving endotoxin tolerance [J].
Amarasinghe, Harindra E. ;
Zhang, Ping ;
Whalley, Justin P. ;
Allcock, Alice ;
Migliorini, Gabriele ;
Brown, Andrew C. ;
Scozzafava, Giuseppe ;
Knight, Julian C. .
BMC GENOMICS, 2023, 24 (01)
[40]   CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome [J].
Klann, Tyler S. ;
Black, Joshua B. ;
Chellappan, Malathi ;
Safi, Alexias ;
Song, Lingyun ;
Hilton, Isaac B. ;
Crawford, Gregory E. ;
Reddy, Timothy E. ;
Gersbach, Charles A. .
NATURE BIOTECHNOLOGY, 2017, 35 (06) :561-+