Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode

被引:0
|
作者
Eun-Kyung Bae
Min-Jeong Kang
Seung-Jae Lee
Eung-Jun Park
Ki-Tae Kim
机构
[1] National Institute of Forest Science,Department of Forest Bioresources
[2] Korea University,Division of Biotechnology, College of Life Sciences and Biotechnology
[3] Sunchon National University,Department of Agricultural Life Science
来源
Scientific Data | / 10卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
The genome of Populus davidiana, a keystone aspen species, has been sequenced to improve our understanding of the evolutionary and functional genomics of the Populus genus. The Hi-C scaffolding genome assembly resulted in a 408.1 Mb genome with 19 pseudochromosomes. The BUSCO assessment revealed that 98.3% of the genome matched the embryophytes dataset. A total of 31,862 protein-coding sequences were predicted, of which 31,619 were functionally annotated. The assembled genome was composed of 44.9% transposable elements. These findings provide new knowledge about the characteristics of the P. davidiana genome and will facilitate comparative genomics and evolutionary research on the genus Populus.
引用
收藏
相关论文
共 50 条
  • [1] Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode
    Bae, Eun-Kyung
    Kang, Min-Jeong
    Lee, Seung-Jae
    Park, Eung-Jun
    Kim, Ki-Tae
    SCIENTIFIC DATA, 2023, 10 (01)
  • [2] The complete mitochondrial genome sequence of Populus davidiana Dode
    Choi, Mi Na
    Han, Muho
    Lee, Hyoshin
    Park, Hong-Seog
    Kim, Min-Young
    Kim, Ji-Seon
    Na, Yoon-Jeong
    Sim, Seung-Woo
    Park, Eung-Jun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (01): : 113 - 114
  • [3] The complete chloroplast genome sequence of Populus davidiana Dode
    Choi, Mi Na
    Han, Muho
    Park, Hong-Seog
    Kim, Min-Young
    Kim, Ji-Seon
    Na, Yoon-Jeong
    Sim, Seung-Woo
    Park, Eung-Jun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2016, 1 (01): : 674 - 675
  • [4] Chromosome-level genome assembly of a triploid poplar Populus alba 'Berolinensis'
    Chen, Song
    Yu, Yue
    Wang, Xinyu
    Wang, Sui
    Zhang, Tianjiao
    Zhou, Yan
    He, Ruihan
    Meng, Nan
    Wang, Yiran
    Liu, Wenxuan
    Liu, Zhijie
    Liu, Jinwen
    Guo, Qiwen
    Huang, Haijiao
    Sederoff, Ronald R.
    Wang, Guohua
    Qu, Guanzheng
    Chen, Su
    MOLECULAR ECOLOGY RESOURCES, 2023, 23 (05) : 1092 - 1107
  • [5] A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
    Li, Jia
    Bian, Chao
    Hu, Yinchang
    Mu, Xidong
    Shen, Xueyan
    Ravi, Vydianathan
    Kuznetsova, Inna S.
    Sun, Ying
    You, Xinxin
    Qiu, Ying
    Zhang, Xinhui
    Yu, Hui
    Huang, Yu
    Xu, Pao
    Gu, Ruobo
    Xu, Junmin
    Orban, Laszlo
    Venkatesh, Byrappa
    Shi, Qiong
    SCIENTIFIC DATA, 2016, 3
  • [6] A chromosome-level genome assembly of the Asian arowana, Scleropages formosus
    Jia Li
    Chao Bian
    Yinchang Hu
    Xidong Mu
    Xueyan Shen
    Vydianathan Ravi
    Inna S. Kuznetsova
    Ying Sun
    Xinxin You
    Ying Qiu
    Xinhui Zhang
    Hui Yu
    Yu Huang
    Pao Xu
    Ruobo Gu
    Junmin Xu
    László Orbán
    Byrappa Venkatesh
    Qiong Shi
    Scientific Data, 3
  • [7] Chromosome-level genome assembly of the Asian citrus psyllid, Diaphorina citri
    Lei, Shuang
    Yu, Shi-Jiang
    Pan, Qi
    Ding, Li-Li
    Li, Si-Chen
    Cheng, Lu-Yan
    Wang, Shu-Qi
    Lou, Bing-Hai
    He, Jun
    Lei, Cui-Yun
    Cong, Lin
    Liu, Hao-Qiang
    Wang, Xue-Feng
    Ran, Chun
    INSECT SCIENCE, 2024, 31 (01) : 13 - 27
  • [8] Chromosome-level genome assembly of the Asian spongy moths Lymantria dispar asiatica
    Xu, Zhe
    Bai, Jianyang
    Zhang, Yue
    Li, Lu
    Min, Mengru
    Cao, Jingyu
    Cao, Jingxin
    Xu, Yanchun
    Li, Fei
    Ma, Ling
    SCIENTIFIC DATA, 2023, 10 (01)
  • [9] A chromosome-level genome assembly of the Asian giant softshell turtle Pelochelys cantorii
    Hong, Xiaoyou
    Liu, Haiyang
    Wang, Yakun
    Li, Mingzhi
    Ji, Liqin
    Wang, Kaikuo
    Wei, Chengqing
    Li, Wei
    Chen, Chen
    Yu, Lingyun
    Zhu, Xinping
    Liu, Xiaoli
    SCIENTIFIC DATA, 2023, 10 (01)
  • [10] A chromosome-level genome assembly of the Asian giant softshell turtle Pelochelys cantorii
    Xiaoyou Hong
    Haiyang Liu
    Yakun Wang
    Mingzhi Li
    Liqin Ji
    Kaikuo Wang
    Chengqing Wei
    Wei Li
    Chen Chen
    Lingyun Yu
    Xinping Zhu
    Xiaoli Liu
    Scientific Data, 10