Complete genome sequence of Serratia plymuthica strain AS12

被引:0
|
作者
Saraswoti Neupane
Roger D. Finlay
Sadhna Alström
Lynne Goodwin
Nikos C. Kyrpides
Susan Lucas
Alla Lapidus
David Bruce
Sam Pitluck
Lin Peters
Galina Ovchinnikova
Olga Chertkov
James Han
Cliff Han
Roxanne Tapia
John C. Detter
Miriam Land
Loren Hauser
Jan-Fang Cheng
Natalia Ivanova
Ioanna Pagani
Hans-Peter Klenk
Tanja Woyke
Nils Högberg
机构
[1] Swedish University of Agricultural Sciences,Uppsala BioCenter, Department of Forest Mycology and Plant Pathology
[2] DOE Joint Genome Institute,Bioscience Division
[3] Los Alamos National Laboratory,undefined
[4] Oak Ridge National Laboratory,undefined
[5] Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures,undefined
来源
Standards in Genomic Sciences | 2012年 / 6卷
关键词
Facultative anaerobe; gram-negative; motile; non-sporulating; mesophilic; chemoorganotrophic; agriculture; CSP 2010;
D O I
暂无
中图分类号
学科分类号
摘要
A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled “Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens”.
引用
收藏
页码:165 / 173
页数:8
相关论文
共 50 条
  • [1] Complete genome sequence of Serratia plymuthica strain AS12
    Neupane, Saraswoti
    Finlay, Roger D.
    Alstrom, Sadhna
    Goodwin, Lynne
    Kyrpides, Nikos C.
    Lucas, Susan
    Lapidus, Alla
    Bruce, David
    Pitluck, Sam
    Peters, Lin
    Ovchinnikova, Galina
    Chertkov, Olga
    Han, James
    Han, Cliff
    Tapia, Roxanne
    Detter, John C.
    Land, Miriam
    Hauser, Loren
    Cheng, Jan-Fang
    Ivanova, Natalia
    Pagani, Ioanna
    Klenk, Hans-Peter
    Woyke, Tanja
    Hogberg, Nils
    STANDARDS IN GENOMIC SCIENCES, 2012, 6 (02): : 165 - 173
  • [2] Complete genome sequence of the plant-associated Serratia plymuthica strain AS13
    Neupane, Saraswoti
    Finlay, Roger D.
    Kyrpides, Nikos C.
    Goodwin, Lynne
    Alstrom, Sadhna
    Lucas, Susan
    Land, Miriam
    Han, James
    Lapidus, Alla
    Cheng, Jan-Fang
    Bruce, David
    Pitluck, Sam
    Peters, Lin
    Ovchinnikova, Galina
    Held, Brittany
    Han, Cliff
    Detter, John C.
    Tapia, Roxanne
    Hauser, Loren
    Ivanova, Natalia
    Pagani, Ioanna
    Woyke, Tanja
    Klenk, Hans-Peter
    Hogberg, Nils
    STANDARDS IN GENOMIC SCIENCES, 2012, 7 (01): : 22 - 30
  • [3] Complete genome sequence of the plant-associated Serratia plymuthica strain AS13
    Saraswoti Neupane
    Roger D. Finlay
    Nikos C. Kyrpides
    Lynne Goodwin
    Sadhna Alström
    Susan Lucas
    Miriam Land
    James Han
    Alla Lapidus
    Jan-Fang Cheng
    David Bruce
    Sam Pitluck
    Lin Peters
    Galina Ovchinnikova
    Brittany Held
    Cliff Han
    John C. Detter
    Roxanne Tapia
    Loren Hauser
    Natalia Ivanova
    Ioanna Pagani
    Tanja Woyke
    Hans-Peter Klenk
    Nils Högberg
    Standards in Genomic Sciences, 2012, 7 : 22 - 30
  • [4] Complete genome sequence of Serratia plymuthica SWSY-3.47
    Takahashi, Himari
    Warashina, Tomoro
    Takahashi, Yui
    Tanaka, Mayuki
    Suzuki, Kazushi
    Morita, Teppei
    Arakawa, Kazuharu
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (11):
  • [5] Complete Genome Sequence of Serratia plymuthica Bacteriophage φMAM1
    Matilla, Miguel A.
    Salmond, George P. C.
    JOURNAL OF VIROLOGY, 2012, 86 (24) : 13872 - 13873
  • [6] Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9
    Saraswoti Neupane
    Nils Högberg
    Sadhna Alström
    Susan Lucas
    James Han
    Alla Lapidus
    Jan-Fang Cheng
    David Bruce
    Lynne Goodwin
    Sam Pitluck
    Lin Peters
    Galina Ovchinnikova
    Megan Lu
    Cliff Han
    John C. Detter
    Roxanne Tapia
    Anne Fiebig
    Miriam Land
    Loren Hauser
    Nikos C. Kyrpides
    Natalia Ivanova
    Ioanna Pagani
    Hans-Peter Klenk
    Tanja Woyke
    Roger D. Finlay
    Standards in Genomic Sciences, 2012, 6 : 54 - 62
  • [7] Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9
    Neupane, Saraswoti
    Hogberg, Nils
    Alstrom, Sadhna
    Lucas, Susan
    Han, James
    Lapidus, Alla
    Cheng, Jan-Fang
    Bruce, David
    Goodwin, Lynne
    Pitluck, Sam
    Peters, Lin
    Ovchinnikova, Galina
    Lu, Megan
    Han, Cliff
    Detter, John C.
    Tapia, Roxanne
    Fiebig, Anne
    Land, Miriam
    Hauser, Loren
    Kyrpides, Nikos C.
    Ivanova, Natalia
    Pagani, Ioanna
    Klenk, Hans-Peter
    Woyke, Tanja
    Finlay, Roger D.
    STANDARDS IN GENOMIC SCIENCES, 2012, 6 (01): : 54 - 62
  • [8] Genome Sequence of Serratia plymuthica V4
    Cleto, S.
    Van der Auwera, G.
    Almeida, C.
    Vieira, M. J.
    Vlamakis, H.
    Kolter, R.
    GENOME ANNOUNCEMENTS, 2014, 2 (03)
  • [9] Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592
    Nicholson, Wayne L.
    Leonard, Michael T.
    Fajardo-Cavazos, Patricia
    Panayotova, Nedka
    Farmerie, William G.
    Triplett, Eric W.
    Schuerger, Andrew C.
    GENOME ANNOUNCEMENTS, 2013, 1 (04)
  • [10] Draft Genome Sequence of the Antagonistic Rhizosphere Bacterium Serratia plymuthica Strain PRI-2C
    Garbeva, P.
    van Elsas, J. D.
    de Boer, W.
    JOURNAL OF BACTERIOLOGY, 2012, 194 (15) : 4119 - 4120