Prediction of DNA-binding residues from protein sequence information using random forests

被引：0
|
作者：
Liangjiang Wang
Mary Qu Yang
Jack Y Yang
机构：
[1] Clemson University,Department of Genetics and Biochemistry
[2] Greenwood Genetic Center,J.C. Self Research Institute of Human Genetics
[3] National Human Genome Research Institute,U.S. Department of Health and Human Services
[4] National Institutes of Health (NIH),Harvard Medical School
[5] Harvard University,undefined
来源：
BMC Genomics | / 10卷
关键词：
Receiver Operating Characteristic Curve; Random Forest; Classifier Performance; Evolutionary Information; Prediction Strength;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Prediction of DNA-binding residues from protein sequence information using random forests
    Wang, Liangjiang
    Yang, Mary Qu
    Yang, Jack Y.
    BMC GENOMICS, 2009, 10
  • [2] Random Forests for Prediction of DNA-Binding Residues in Protein Sequences Using Evolutionary Information
    Wang, Liangjiang
    FGCN: PROCEEDINGS OF THE 2008 SECOND INTERNATIONAL CONFERENCE ON FUTURE GENERATION COMMUNICATION AND NETWORKING, VOLS 1 AND 2, 2008, : 976 - 981
  • [3] Prediction of DNA-binding residues from sequence
    Ofran, Yanay
    Mysore, Venkatesh
    Rost, Burkhard
    BIOINFORMATICS, 2007, 23 (13) : I347 - I353
  • [4] Prediction of DNA-binding residues from sequence information using convolutional neural network
    Zhou, Jiyun
    Lu, Qin
    Xu, Ruifeng
    Gui, Lin
    Wang, Hongpeng
    INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2017, 17 (02) : 132 - 152
  • [5] Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
    Ahmad, S
    Gromiha, MM
    Sarai, A
    BIOINFORMATICS, 2004, 20 (04) : 477 - 486
  • [6] Identification of DNA-binding residues of a protein from its primary sequence
    Ma, Xin
    Hu, Lefu
    2012 FIFTH INTERNATIONAL SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE AND DESIGN (ISCID 2012), VOL 1, 2012, : 290 - 293
  • [7] Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information
    Ma, Xin
    Guo, Jing
    Liu, Hong-De
    Xie, Jian-Ming
    Sun, Xiao
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2012, 9 (06) : 1766 - 1775
  • [8] Prediction of DNA-binding Protein Using Random Forest and Elastic Net
    Chen, Qiujian
    Li, Lei
    Yang, Kun
    Long, Rong
    Shi, Feng
    2017 13TH INTERNATIONAL CONFERENCE ON NATURAL COMPUTATION, FUZZY SYSTEMS AND KNOWLEDGE DISCOVERY (ICNC-FSKD), 2017,
  • [9] StackDPPred: a stacking based prediction of DNA-binding protein from sequence
    Mishra, Avdesh
    Pokhrel, Pujan
    Hoque, Md Tamjidul
    BIOINFORMATICS, 2019, 35 (03) : 433 - 441
  • [10] CNNsite: Prediction of DNA-binding Residues in Proteins Using Convolutional Neural Network with Sequence Features
    Zhou, Jiyun
    Lu, Qin
    Xu, Ruifeng
    Gui, Lin
    Wang, Hongpeng
    2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2016, : 78 - 85
12345