Global identification of quantitative trait loci and candidate genes for cold stress and chilling acclimation in rice through GWAS and RNA-seq

[1] Agalou A(2008)A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol 66 87-103

[2] Purwantomo S(2003)Diverse environmental cues transiently regulate OsOPR1 of the "octadecanoid pathway" revealing its importance in rice defense/stress and development Biochem Biophys Res Commun 310 1073-1082

[3] Overnäs E(2015)SNP-seek database of SNPs derived from 3000 rice genomes Nucleic Acids Res 43 1023-1027

[4] Johannesson H(2006)Fine mapping of the Theor Appl Genet 113 467-475

[5] Zhu X(2007) locus, a major QTL for seedling cold tolerance in rice Mol Breed 20 349-358

[6] Estiati A(2015)Fine mapping of the Bioinformatics 31 166-169

[7] de Kam RJ(2014) locus associated with seedling cold tolerance in rice ( Plant Cell Physiol 55 897-912

[8] Engström P(2020) L.) Mol Plant 13 1194-1202

[9] Slamet-Loedin IH(2013)HTSeq—a Python framework to work with high-throughput sequencing data Front Plant Sci 4 83-451

[10] Zhu Z(2007)A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway Trends Plant Sci 12 444-1310

[1] Agalou A(2008)A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members Plant Mol Biol 66 87-103

[2] Purwantomo S(2003)Diverse environmental cues transiently regulate OsOPR1 of the "octadecanoid pathway" revealing its importance in rice defense/stress and development Biochem Biophys Res Commun 310 1073-1082

[3] Overnäs E(2015)SNP-seek database of SNPs derived from 3000 rice genomes Nucleic Acids Res 43 1023-1027

[4] Johannesson H(2006)Fine mapping of the Theor Appl Genet 113 467-475

[5] Zhu X(2007) locus, a major QTL for seedling cold tolerance in rice Mol Breed 20 349-358

[6] Estiati A(2015)Fine mapping of the Bioinformatics 31 166-169

[7] de Kam RJ(2014) locus associated with seedling cold tolerance in rice ( Plant Cell Physiol 55 897-912

[8] Engström P(2020) L.) Mol Plant 13 1194-1202

[9] Slamet-Loedin IH(2013)HTSeq—a Python framework to work with high-throughput sequencing data Front Plant Sci 4 83-451

[10] Zhu Z(2007)A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway Trends Plant Sci 12 444-1310