Combined DFT calculation, Hirshfeld surface analysis, and Energy framework study of non-covalent interactions in the crystal structure of (Z)-5-ethylidene-2-thiohydantoin determined by powder X-ray diffraction

被引:7
作者
Delgado, Gerzon E. [1 ,2 ]
Mora, Asiloe J. [1 ]
Seijas, Luis E. [3 ]
Rincon, Luis [4 ,5 ]
Marroquin, Gustavo [6 ]
Cisterna, Jonathan [2 ]
Cardenas, Alejandro [7 ]
Brito, Ivan [2 ]
机构
[1] Univ Los Andes, Fac Ciencias, Dept Quim, Lab Cristallog, Merida 5101, Venezuela
[2] Univ Antofagasta, Fac Ciencias Basicas, Dept Quim, Campus Coloso, Antofagasta 1240000, Chile
[3] Univ Los Andes, Fac Ciencias, Dept Quim, Lab Proc Dinam Quim, Merida 5101, Venezuela
[4] Univ San Francisco Quito, Grp Quim Computac & Teor, Quito 170901, Ecuador
[5] Univ San Francisco Quito, Inst Simulac Computac, Quito 170901, Ecuador
[6] Inst Politecn Nacl, Escuela Super Ingn Quim & Ind Extract, Mexico City 07738, DF, Mexico
[7] Univ Antofagasta, Fac Ciencias Basicas, Dept Fis, Campus Coloso, Antofagasta 1240000, Chile
关键词
Powder X-ray diffraction; thiohydantoin; hydrogen bond patterns; NCI calculations; Hirshfeld surface analysis; Energy framework; HYDANTOIN; THIOHYDANTOIN; PATTERNS; CANCER; RELIABILITY; REFINEMENT; CRITERION; CHEMISTRY; MOLECULE; ACID;
D O I
10.1016/j.molstruc.2021.130361
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The thiohydantoin core is used in the synthesis and development of new drugs. Furthermore, the study of these materials allows us to analyze the role that non-covalent interactions play in their supramolecular structure and how they can influence their pharmacological properties. Herein, a novel thiohydantoin compound, namely (Z)-5-ethylidene-2-thiohydantoin was synthesized and characterized by FT-IR, H-1-NMR, and C-13-NMR spectroscopy. Its crystal structure was determined and refined by powder X-ray diffraction techniques. This material crystallizes in the monoclinic system with space group P2(1)/c, Z=4. The crystal packing is controlled by N-H center dot center dot center dot O, N-H center dot center dot center dot S and C-H center dot center dot center dot O hydrogen bond interactions, forming infinite two-dimensional sheets with graph-set motifs R-2(2)(8), R-2(1) (7), and R-6(6) (26). NCI calculations, Hirshfeld surface analysis, and the Energy framework study reproduce in good agreement the crystal packing exhibited by the X-ray diffraction study. (C) 2021 Elsevier B.V. All rights reserved.
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页数:11
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