A minimal hybridization chain reaction (HCR) system using peptide nucleic acids

被引:36
作者
Kim, Ki Tae [1 ]
Angerani, Simona [1 ]
Winssinger, Nicolas [1 ]
机构
[1] Univ OfGeneva, Geneva, Switzerland
基金
瑞士国家科学基金会;
关键词
CARBONIC-ANHYDRASE-IX; STRAND-DISPLACEMENT; TEMPLATED REACTIONS; POOR-PROGNOSIS; DNA; PNA; AMPLIFICATION; RECOGNITION; MICRORNA; TARGET;
D O I
10.1039/d1sc01269j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The HCR represents a powerful tool for amplification in DNA-based circuitry and sensing applications, yet requires the use of long DNA sequences to grant hairpin metastability. Here we describe a minimal HCR system based on peptide nucleic acids (PNAs). A system comprising a 5-mer stem and 5-mer loop/toehold hairpins was found to be suitable to achieve rapid amplification. These hairpins were shown to yield >10-fold amplification in 2 h and be suitable for the detection of a cancer biomarker on live cells. The use of gamma-peg-modified PNA was found to be beneficial.
引用
收藏
页码:8218 / 8223
页数:6
相关论文
共 46 条
[31]   Gamma Peptide Nucleic Acids: As Orthogonal Nucleic Acid Recognition Codes for Organizing Molecular Self-Assembly [J].
Sacui, Julia ;
Hsieh, Wei-Che ;
Manna, Arunava ;
Sahu, Bichismita ;
Ly, Danith H. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (26) :8603-8610
[32]   Synthesis and Characterization of Conformationally Preorganized, (R)-Diethylene Glycol-Containing γ-Peptide Nucleic Acids with Superior Hybridization Properties and Water Solubility [J].
Sahu, Bichismita ;
Sacui, Iulia ;
Rapireddy, Srinivas ;
Zanotti, Kimberly J. ;
Bahal, Raman ;
Armitage, Bruce A. ;
Ly, Danith H. .
JOURNAL OF ORGANIC CHEMISTRY, 2011, 76 (14) :5614-5627
[33]  
Tafreshi NK, 2014, SUBCELL BIOCHEM, V75, P221, DOI 10.1007/978-94-007-7359-2_12
[34]   Shape selective bifacial recognition of double helical DNA [J].
Thadke, Shivaji A. ;
Hridya, V. M. ;
Perera, J. Dinithi R. ;
Gil, Roberto R. ;
Mukherjee, Arnab ;
Ly, Danith H. .
COMMUNICATIONS CHEMISTRY, 2018, 1
[35]   Modified in situ Hybridization Chain Reaction Using Short Hairpin DNAs [J].
Tsuneoka, Yousuke ;
Funato, Hiromasa .
FRONTIERS IN MOLECULAR NEUROSCIENCE, 2020, 13
[36]   Duplex formation and secondary structure of γ-PNA observed by NMR and CD [J].
Vieville, J. M. P. ;
Barluenga, S. ;
Winssinger, N. ;
Delsuc, M. A. .
BIOPHYSICAL CHEMISTRY, 2016, 210 :9-13
[37]   Amplified Analysis of DNA by the Autonomous Assembly of Polymers Consisting of DNAzyme Wires [J].
Wang, Fuan ;
Elbaz, Johann ;
Orbach, Ron ;
Magen, Nimrod ;
Willner, Itamar .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (43) :17149-17151
[38]   Three-dimensional DNA nanostructures to improve the hyperbranched hybridization chain reaction [J].
Wang, Jing ;
Wang, Dong-Xia ;
Ma, Jia-Yi ;
Wang, Ya-Xin ;
Kong, De-Ming .
CHEMICAL SCIENCE, 2019, 10 (42) :9758-9767
[39]   Biosupramolecular Systems: Integrating Cues into Responses [J].
Watson, Emma E. ;
Angerani, Simona ;
Sabale, Pramod M. ;
Winssinger, Nicolas .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2021, 143 (12) :4467-4482
[40]   Enhanced visualization of cell surface glycans via a hybridization chain reaction [J].
Wen, Xiaohong ;
Yuan, Baoyin ;
Zhang, Junxun ;
Meng, Xiangxian ;
Guo, Qiuping ;
Li, Lie ;
Li, Zenghui ;
Jiang, Huishan ;
Wang, Kemin .
CHEMICAL COMMUNICATIONS, 2019, 55 (43) :6114-6117