Complete mitochonerial genome of a leaf beetle, Callispa bowringi (Coleoptera: Chrysomelidae)

被引：5

作者：

Liu, Peng ^{[1
]}

Guo, Qingyun ^{[1
]}

Xu, Jiasheng ^{[1
]}

Liao, Chengqing ^{[1
]}

Dai, Xiaohua ^{[1
,2
]}

机构：

[1] Gannan Normal Univ, Sch Life & Environm Sci, Leafminer Grp, Shida South Rd 1, Ganzhou City 341000, Jiangxi, Peoples R China

[2] Natl Navel Orange Engn Res Ctr, Ganzhou, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 01期

基金：

中国国家自然科学基金;

关键词：

Leaf beetle; mitochondrial genome; Callispa bowringi; phylogenetic analysis; COMPLETE MITOCHONDRIAL GENOME; MINING BEETLE; SEQUENCE; SOFTWARE;

D O I：

10.1080/23802359.2017.1413302

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete circular mitochondrial genome of Callispa bowringi was 17,060 by in length, including two ribosomal RNA genes, 22 transfer RNAs, 13 protein-coding genes (PCGs) and one 2246-bp non-coding AT-rich region. All 22 tRNA genes displayed a typical clover-leaf structure except for tRNA(ser) (AGN). All 13 PCGs initiated with ATN codons. Only three PCGs used the incomplete stop codons "TA" or "T", while ten PCGs terminated with typical stop codons "TAA" and "TGA". Phylogenetic analysis based on 13 PCGs of Chrysomelidae mitogenomes showed that C. bowringi was closely related to Agonita chinensis and Rhadinosa nigrocyanea.

引用

页码：213 / 214

页数：2

共 14 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2]

Chen SH, 1986, FAUNA SINICA

[3] A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data [J].

Coil, David ;

Jospin, Guillaume ;

Darling, Aaron E. .

BIOINFORMATICS, 2015, 31 (04) :587-589

[4] Complete mitochondrial genome of a leaf-mining beetle, Agonita chinensis Weise (Coleoptera: Chrysomelidae) [J].

Guo, Qingyun ;

Xu, Jiasheng ;

Liao, Chengqing ;

Dai, Xiaohua ;

Jiang, Xilin .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :532-533

[5] Complete mitochondrial genome of a leaf-mining beetle, Rhadinosa nigrocyanea (Coleoptera: Chrysomelidae) with phylogenetic consideration [J].

Guo, Qingyun ;

Xu, Jiasheng ;

Dai, Xiaohua ;

Liao, Chengqing ;

Long, Chengpeng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :446-448

[6]

Hua LZ, 2002, List of Chinese Insects, VII

[7] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[8] Complete mitochondrial genome of the seven-spotted lady beetle, Coccinella septempunctata (Coleoptera: Coccinellidae) [J].

Kim, Min Jee ;

Wan, Xinlong ;

Kim, Iksoo .

MITOCHONDRIAL DNA, 2012, 23 (03) :179-181

[9] Versatile and open software for comparing large genomes [J].

Kurtz, S ;

Phillippy, A ;

Delcher, AL ;

Smoot, M ;

Shumway, M ;

Antonescu, C ;

Salzberg, SL .

GENOME BIOLOGY, 2004, 5 (02)

[10] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

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