Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria

被引:78
作者
Cao, Yangxiaolu [1 ]
Ryser, Marc D. [2 ]
Payne, Stephen [1 ]
Li, Bochong [1 ]
Rao, Christopher V. [3 ]
You, Lingchong [1 ,4 ]
机构
[1] Duke Univ, Dept Biomed Engn, Durham, NC 27708 USA
[2] Duke Univ, Dept Math, Durham, NC 27708 USA
[3] Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USA
[4] Duke Univ, Duke Ctr Genom & Computat Biol, Durham, NC 27708 USA
基金
瑞士国家科学基金会; 美国国家科学基金会;
关键词
VERTEBRATE NEURAL-TUBE; MORPHOGEN GRADIENTS; ACTIVATION GRADIENT; GENE-EXPRESSION; SPATIAL-PATTERN; GROWTH; MECHANISM; BIOLOGY; DESIGN; UNDERSTAND;
D O I
10.1016/j.cell.2016.03.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Scale invariance refers to the maintenance of a constant ratio of developing organ size to body size. Although common, its underlying mechanisms remain poorly understood. Here, we examined scaling in engineered Escherichia coli that can form self-organized core-ring patterns in colonies. We found that the ring width exhibits perfect scale invariance to the colony size. Our analysis revealed a collective space-sensing mechanism, which entails sequential actions of an integral feedback loop and an incoherent feedforward loop. The integral feedback is implemented by the accumulation of a diffusive chemical produced by a colony. This accumulation, combined with nutrient consumption, sets the timing for ring initiation. The incoherent feedforward is implemented by the opposing effects of the domain size on the rate and duration of ring maturation. This mechanism emphasizes a role of timing control in achieving robust pattern scaling and provides a new perspective in examining the phenomenon in natural systems.
引用
收藏
页码:620 / 630
页数:11
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