The next frontier of the anaerobic digestion microbiome: From ecology to process control

被引:27
作者
De Vrieze, Jo [1 ]
机构
[1] Univ Ghent, Ctr Microbiol Ecol & Technol CMET, Coupure Links 53, B-9000 Ghent, Belgium
关键词
Amplicon sequencing; Anaerobic digestion; Fingerprinting; Methanogenesis; Microbiome; EARLY WARNING INDICATORS; PROCESS FAILURE; COMMUNITY; SCALE; WASTE; SLUDGE; PERSPECTIVES; REDUNDANCY; PARAMETERS; DIVERSITY;
D O I
10.1016/j.ese.2020.100032
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
The anaerobic digestion process has been one of the key processes for renewable energy recovery from organic waste streams for over a century. The anaerobic digestion microbiome is, through the continuous development of novel techniques, evolving from a black box to a well-defined consortium, but we are not there yet. In this perspective, I provide my view on the current status and challenges of the anaerobic digestion microbiome, as well as the opportunities and solutions to exploit it. I consider identification and fingerprinting of the anaerobic digestion microbiome as complementary tools to monitor the anaerobic digestion microbiome. However, data availability, method-inherent biases and correct taxa identification hamper the accuracy and reproducibility of anaerobic digestion microbiome characterization. Standardisation of microbiome research in anaerobic digestion and other engineered systems will be essential in the coming decades, for which I proposed some targeted solutions. These will bring anaerobic digestion from a single-purpose energy-recovery technology to a versatile process for integrated resource recovery. It is my opinion that the exploitation of the microbiome will be a driver of innovation, and that it has a key role to play in the bio-based economy of the decades to come. (C) 2020 The Author(s). Published by Elsevier B.V. on behalf of Chinese Society for Environmental Sciences, Harbin Institute of Technology, Chinese Research Academy of Environmental Sciences.
引用
收藏
页数:5
相关论文
共 63 条
[1]   Microbial protein production from methane via electrochemical biogas upgrading [J].
Acosta, Nayaret ;
Sakarika, Myrsini ;
Kerckhof, Frederiek-Maarten ;
Law, Cindy Ka Y. ;
De Vrieze, Jo ;
Rabaey, Korneel .
CHEMICAL ENGINEERING JOURNAL, 2020, 391
[2]   Evaluation of an electronic nose for the early detection of organic overload of anaerobic digesters [J].
Adam, Gilles ;
Lemaigre, Sebastien ;
Romain, Anne-Claude ;
Nicolas, Jacques ;
Delfosse, Philippe .
BIOPROCESS AND BIOSYSTEMS ENGINEERING, 2013, 36 (01) :23-33
[3]   Back to Basics - The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities [J].
Albertsen, Mads ;
Karst, Soren M. ;
Ziegler, Anja S. ;
Kirkegaard, Rasmus H. ;
Nielsen, Per H. .
PLOS ONE, 2015, 10 (07)
[4]   Resistance, resilience, and redundancy in microbial communities [J].
Allison, Steven D. ;
Martiny, Jennifer B. H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 :11512-11519
[5]  
[Anonymous], 2018, Renewable energy statistics, 2018
[6]   Principles and potential of the anaerobic digestion of waste-activated sludge [J].
Appels, Lise ;
Baeyens, Jan ;
Degreve, Jan ;
Dewil, Raf .
PROGRESS IN ENERGY AND COMBUSTION SCIENCE, 2008, 34 (06) :755-781
[7]   The long journey towards standards for engineering biosystems Are the Molecular Biology and the Biotech communities ready to standardise? [J].
Beal, Jacob ;
Goni-Moreno, Angel ;
Myers, Chris ;
Hecht, Ariel ;
de Vicente, Maria del Carmen ;
Parco, Maria ;
Schmidt, Markus ;
Timmis, Kenneth ;
Baldwin, Geoff ;
Friedrichs, Steffi ;
Freemont, Paul ;
Kiga, Daisuke ;
Ordozgoiti, Elena ;
Rennig, Maja ;
Rios, Leonardo ;
Tanner, Kristie ;
de Lorenzo, Victor ;
Porcar, Manuel .
EMBO REPORTS, 2020, 21 (05)
[8]   A T-RFLP database for the rapid profiling of methanogenic communities in anaerobic digesters [J].
Buehligen, Franziska ;
Lucas, Rico ;
Nikolausz, Marcell ;
Kleinsteuber, Sabine .
ANAEROBE, 2016, 39 :114-116
[9]   Online flow cytometric monitoring of microbial water quality in a full-scale water treatment plant [J].
Buysschaert, Benjamin ;
Vermijs, Lotte ;
Naka, Agathi ;
Boon, Nico ;
De Gusseme, Bart .
NPJ CLEAN WATER, 2018, 1
[10]   Exact sequence variants should replace operational taxonomic units in marker-gene data analysis [J].
Callahan, Benjamin J. ;
McMurdie, Paul J. ;
Holmes, Susan P. .
ISME JOURNAL, 2017, 11 (12) :2639-2643