The Effects of In-Plane Spatial Resolution on CT-Based Radiomic Features' Stability with and without ComBat Harmonization

被引:37
作者
Ibrahim, Abdalla [1 ,2 ,3 ,4 ,5 ,6 ]
Refaee, Turkey [1 ,7 ]
Primakov, Sergey [1 ,5 ,6 ]
Barufaldi, Bruno [8 ]
Acciavatti, Raymond J. [8 ]
Granzier, Renee W. Y. [9 ]
Hustinx, Roland [3 ,4 ]
Mottaghy, Felix M. [2 ,5 ,6 ]
Woodruff, Henry C. [1 ,2 ]
Wildberger, Joachim E. [2 ]
Lambin, Philippe [1 ,2 ]
Maidment, Andrew D. A.
机构
[1] Maastricht Univ, GROW Sch Oncol, Dept Precis Med, DLab, NL-6200 Maastricht, Netherlands
[2] Maastricht Univ, Med Ctr, Dept Radiol & Nucl Med, NL-6200 Maastricht, Netherlands
[3] Univ Liege, Univ Hosp Liege, Div Nucl Med & Oncol Imaging, Dept Med Phys, B-4000 Liege, Belgium
[4] Univ Liege, GIGA CRC In Vivo Imaging, B-4000 Liege, Belgium
[5] Rhein Westfal TH Aachen, Univ Hosp, Dept Nucl Med, D-52074 Aachen, Germany
[6] Rhein Westfal TH Aachen, Univ Hosp, Comprehens Diagnost Ctr Aachen CDCA, D-52074 Aachen, Germany
[7] Jazan Univ, Fac Appl Med Sci, Dept Diagnost Radiol, Jazan 45142, Saudi Arabia
[8] Univ Penn, Perelman Sch Med, Dept Radiol, Philadelphia, PA 19104 USA
[9] Maastricht Univ, Med Ctr, GROW Sch Oncol, Dept Surg, NL-6200 Maastricht, Netherlands
关键词
image processing; harmonization; reproducibility; radiomics biomarkers; VOXEL SIZE; COEFFICIENT; INFORMATION; SCANNERS; IMAGES;
D O I
10.3390/cancers13081848
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Simple Summary Handcrafted radiomic features (HRFs) are quantitative features extracted from medical images, and they are mined for associations with different clinical endpoints. While many studies reported on the potential of HRFs to unravel clinical endpoints, the sensitivity of HRFs to variations in scanning parameters is affecting the inclusion of radiomic signatures in clinical decision-making. In this study, we investigated the effects of variations in the in-plane resolution of scans, while all other scanning parameters were fixed. Moreover, we investigated the effects of ten different image resampling methods and ComBat harmonization on the reproducibility of HRFs. Our results show that the majority of HRFs are significantly and variably affected by the differences in in-plane resolution. The majority of image resampling methods resulted in a higher number of reproducible HRFs compared to ComBat harmonization. Our developed framework guides identifying the reproducible and harmonizable HRFs in different scenarios. While handcrafted radiomic features (HRFs) have shown promise in the field of personalized medicine, many hurdles hinder its incorporation into clinical practice, including but not limited to their sensitivity to differences in acquisition and reconstruction parameters. In this study, we evaluated the effects of differences in in-plane spatial resolution (IPR) on HRFs, using a phantom dataset (n = 14) acquired on two scanner models. Furthermore, we assessed the effects of interpolation methods (IMs), the choice of a new unified in-plane resolution (NUIR), and ComBat harmonization on the reproducibility of HRFs. The reproducibility of HRFs was significantly affected by variations in IPR, with pairwise concordant HRFs, as measured by the concordance correlation coefficient (CCC), ranging from 42% to 95%. The number of concordant HRFs (CCC > 0.9) after resampling varied depending on (i) the scanner model, (ii) the IM, and (iii) the NUIR. The number of concordant HRFs after ComBat harmonization depended on the variations between the batches harmonized. The majority of IMs resulted in a higher number of concordant HRFs compared to ComBat harmonization, and the combination of IMs and ComBat harmonization did not yield a significant benefit. Our developed framework can be used to assess the reproducibility and harmonizability of RFs.
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页数:16
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共 45 条
  • [41] Test-Retest Data for Radiomics Feature Stability Analysis: Generalizable or Study-Specific?
    van Timmeren, Janna E.
    Leijenaar, Ralph T. H.
    van Elmpt, Wouter
    Wang, Jiazhou
    Zhang, Zhen
    Dekker, Andre
    Lambin, Philippe
    [J]. TOMOGRAPHY, 2016, 2 (04) : 361 - 365
  • [42] Agreement Analysis: What He Said, She Said Versus You Said
    Vetter, Thomas R.
    Schober, Patrick
    [J]. ANESTHESIA AND ANALGESIA, 2018, 126 (06) : 2123 - 2128
  • [43] Decision Support Systems in Oncology
    Walsh, Sean
    de Jong, Evelyn E. C.
    van Timmeren, Janna E.
    Ibrahim, Abdalla
    Compter, Inge
    Peerlings, Jurgen
    Sanduleanu, Sebastian
    Refaee, Turkey
    Keek, Simon
    Larue, Ruben T. H. M.
    van Wijk, Yvonka
    Even, Aniek J. G.
    Jochems, Arthur
    Barakat, Mohamed S.
    Leijenaar, Ralph T. H.
    Lambin, Philippe
    [J]. JCO CLINICAL CANCER INFORMATICS, 2019, 3 : 1 - 9
  • [44] Zar J. H., 2005, Encyclop Biostat, V7, DOI DOI 10.1002/0470011815.B2A15150
  • [45] Learning from scanners: Bias reduction and feature correction in radiomics
    Zhovannik, Ivan
    Bussink, Johan
    Traverso, Alberto
    Shi, Zhenwei
    Kalendralis, Petros
    Wee, Leonard
    Dekker, Andre
    Fijten, Rianne
    Monshouwer, Rene
    [J]. CLINICAL AND TRANSLATIONAL RADIATION ONCOLOGY, 2019, 19 : 33 - 38