Expression of the RNA-binding protein RBP10 promotes the bloodstream-form differentiation state in Trypanosoma brucei

被引:55
作者
Mugo, Elisha [1 ]
Clayton, Christine [1 ]
机构
[1] Heidelberg Univ, Zentrum Mol Biol, DKFZ ZMBH Alliance, Heidelberg, Germany
关键词
3 UNTRANSLATED REGION; LIFE-CYCLE STAGES; MESSENGER-RNA; GENE-EXPRESSION; PHOSPHOGLYCERATE KINASE; SURFACE PROTEIN; INSECT FORMS; POSTTRANSCRIPTIONAL CONTROL; TRANSCRIPTION FACTORS; CRYSTAL-STRUCTURE;
D O I
10.1371/journal.ppat.1006560
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In nearly all eukaryotes, cellular differentiation is governed by changes in transcription, and stabilized by chromatin and DNA modification. Gene expression control in the pathogen Trypanosoma brucei, in contrast, relies almost exclusively on post-transcriptional mechanisms, so RNA binding proteins must assume the burden that is usually borne by transcription factors. T. brucei multiply in the blood of mammals as bloodstream forms, and in the midgut of Tsetse flies as procyclic forms. We show here that a single RNA-binding protein, RBP10, promotes the bloodstream-form trypanosome differentiation state. Depletion of RBP10 from bloodstream-form trypanosomes gives cells that can grow only as procyclic forms; conversely, expression of RBP10 in procyclic forms converts them to bloodstream forms. RBP10 binds to procyclic-specific mRNAs containing an UAUUUUUU motif, targeting them for translation repression and destruction. Products of RBP10 target mRNAs include not only the major procyclic surface protein and enzymes of energy metabolism, but also protein kinases and stage-specific RNA-binding proteins: this suggests that alterations in RBP10 trigger a regulatory cascade.
引用
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页数:37
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共 129 条
[1]   Comparative analysis of RNA sequencing methods for degraded or low-input samples [J].
Adiconis, Xian ;
Borges-Rivera, Diego ;
Satija, Rahul ;
DeLuca, David S. ;
Busby, Michele A. ;
Berlin, Aaron M. ;
Sivachenko, Andrey ;
Thompson, Dawn Anne ;
Wysoker, Alec ;
Fennell, Timothy ;
Gnirke, Andreas ;
Pochet, Nathalie ;
Regev, Aviv ;
Levin, Joshua Z. .
NATURE METHODS, 2013, 10 (07) :623-+
[2]   Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major [J].
Akopyants, NS ;
Matlib, RS ;
Bukanova, EN ;
Smeds, MR ;
Brownstein, BH ;
Stormo, GD ;
Beverley, SM .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2004, 136 (01) :71-86
[3]   A doubly inducible system for RNA interference and rapid RNAi plasmid construction in Trypanosoma brucei [J].
Alibu, VP ;
Storm, L ;
Haile, S ;
Clayton, C ;
Horn, D .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2005, 139 (01) :75-82
[4]   High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome [J].
Alsford, Sam ;
Turner, Daniel J. ;
Obado, Samson O. ;
Sanchez-Flores, Alejandro ;
Glover, Lucy ;
Berriman, Matthew ;
Hertz-Fowler, Christiane ;
Horn, David .
GENOME RESEARCH, 2011, 21 (06) :915-924
[5]   Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression [J].
Antwi, Enoch B. ;
Haanstra, Jurgen R. ;
Ramasamy, Gowthaman ;
Jensen, Bryan ;
Droll, Dorothea ;
Rojas, Federico ;
Minia, Igor ;
Terrao, Monica ;
Merce, Clementine ;
Matthews, Keith ;
Myler, Peter J. ;
Parsons, Marilyn ;
Clayton, Christine .
BMC GENOMICS, 2016, 17
[6]   Trypanosoma brucei PUF9 Regulates mRNAs for Proteins Involved in Replicative Processes over the Cell Cycle [J].
Archer, Stuart K. ;
Luu, Van-Duc ;
de Queiroz, Rafael A. ;
Brems, Stefanie ;
Clayton, Christine .
PLOS PATHOGENS, 2009, 5 (08)
[7]   The crystal structure of the Split End protein SHARP adds a new layer of complexity to proteins containing RNA recognition motifs [J].
Arieti, Fabiana ;
Gabus, Caroline ;
Tambalo, Margherita ;
Huet, Tiphaine ;
Round, Adam ;
Thore, Stephane .
NUCLEIC ACIDS RESEARCH, 2014, 42 (10) :6742-6752
[8]   DREME: motif discovery in transcription factor ChIP-seq data [J].
Bailey, Timothy L. .
BIOINFORMATICS, 2011, 27 (12) :1653-1659
[9]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[10]   The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation [J].
Benz, Corinna ;
Mulindwa, Julius ;
Ouna, Benard ;
Clayton, Christine .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2011, 177 (02) :148-151