Utility of RNA Sequencing Analysis in the Context of Genetic Testing

被引:7
作者
Tahiliani, Jackie [1 ]
Leisk, Jeanne [1 ]
Aradhya, Kerry [1 ]
Ouyang, Karen [1 ]
Aradhya, Swaroop [1 ]
Nykamp, Keith [1 ]
机构
[1] Invitae, 1400 16th St, San Francisco, CA 94103 USA
关键词
Genetic counseling; RNA analysis; RNA sequencing; Splicing; Variant discovery; Variant interpretation; VARIANTS; SEQ;
D O I
10.1007/s40142-020-00195-7
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Purpose of Review RNA analysis is beginning to be integrated into clinical laboratory genomics, and a review of its current uses and limitations is warranted. Here, we summarize the scope and utility of RNA analysis in the context of clinical genetic testing, including considerations for genetic counseling. Recent Findings RNA analysis is a powerful approach for interpreting some variants of uncertain significance, for analyzing splicing alterations, for providing additional functional evidence for sequence and structural variants, and for discovering novel variants. However, a review of RNA sequencing methods has noted variability in both laboratory processes and findings. Genetic counseling related to RNA analysis has to take into account nonstandardized laboratory processes, sample-type limitations, and differences in variant-interpretation outcomes. RNA analysis is an important complement to DNA testing, although limitations still exist. Maximizing the utility of RNA analysis will require appropriate patient referrals and standardization of laboratory processes as the practice continues to expand the ability to identify and resolve molecular diagnoses.
引用
收藏
页码:140 / 146
页数:7
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