Importance of rigidity of ice-binding protein (FfIBP) for hyperthermal hysteresis activity and microbial survival

被引:4
|
作者
Hwang, Jisub [1 ,2 ]
Kim, Bomi [1 ,2 ]
Lee, Min Ju [1 ]
Kim, Eun Jae [3 ]
Cho, Sung Mi [3 ]
Lee, Sung Gu [1 ,2 ]
Han, Se Jong [2 ,3 ]
Kim, Kitae [1 ,2 ]
Lee, Jun Hyuck [1 ,2 ]
Do, Hackwon [1 ,2 ]
机构
[1] Korea Polar Res Inst, Res Unit Cryogen Novel Mat, Incheon 21990, South Korea
[2] Univ Sci & Technol, Dept Polar Sci, Incheon 21990, South Korea
[3] Korea Polar Res Inst, Div Life Sci, Incheon 21990, South Korea
关键词
Polar microorganisms; Ice binding proteins; Cold adaptation; HYPERACTIVE ANTIFREEZE PROTEIN; ANCHORED CLATHRATE; WINTER FLOUNDER; DIVERSITY; MECHANISM; SURFACE;
D O I
10.1016/j.ijbiomac.2022.02.032
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ice-binding proteins (IBPs) are well-characterized proteins responsible for the cold-adaptation mechanisms. Despite extensive structural and biological investigation of IBPs and antifreeze proteins, only a few studies have considered the relationship between protein stabilization and thermal hysteresis (TH) activity as well as the implication of hyperactivity. Here, we investigated the important role of the head capping region in stabilization and the hyper-TH activity of FfIBP using molecular dynamics simulation. Data comparison revealed that residues on the ice-binding site of the hyperactive FfIBP are immobilized, which could be correlated with TH activity. Further comparison analysis indicated the disulfide bond in the head region is mainly involved in protein sta-bilization and is crucial for hyper-TH activity. This finding could also be generalized to known hyperactive IBPs. Furthermore, in mimicking the physiological conditions, bacteria with membrane-anchored FfIBP formed brine pockets in a TH activity-dependent manner. Cells with a higher number of TH-active IBPs showed an increased number of brine pockets, which may be beneficial for short-and long-term survival in cold environments by reducing the salt concentration. The newly identified conditions for hyper-TH activity and their implications on bacterial survival provide insights into novel mechanistic aspects of cold adaptation in polar microorganisms.
引用
收藏
页码:485 / 499
页数:15
相关论文
共 37 条
  • [21] Elucidating the Sluggish Water Dynamics at the Ice-Binding Surface of the Hyperactive Tenebrio molitor Antifreeze Protein
    Midya, Uday Sankar
    Bandyopadhyay, Sanjoy
    JOURNAL OF PHYSICAL CHEMISTRY B, 2023, 127 (01) : 121 - 132
  • [22] Characterization of the ice-binding protein from Arctic yeast Leucosporidium sp AY30
    Park, Kyoung Sun
    Do, Hackwon
    Lee, Jun Hyuck
    Park, Seung Il
    Kim, Eun Jung
    Kim, Soon-Jong
    Kang, Sung-Ho
    Kim, Hak Jun
    CRYOBIOLOGY, 2012, 64 (03) : 286 - 296
  • [23] Investigation of the Ice-Binding Site of an Insect Antifreeze Protein Using Sum-Frequency Generation Spectroscopy
    Meister, Konrad
    Lotze, Stephan
    Olijve, Luuk L. C.
    DeVries, Arthur L.
    Duman, John G.
    Voets, Ilja K.
    Bakker, Huib J.
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2015, 6 (07): : 1162 - 1167
  • [24] Structure of an Ice-Binding Protein from Myoxocephalus octodecemspinosus Determined by Molecular Dynamics and Based on Circular Dichroism Spectra
    Oleinik G.A.
    Zhdanova P.
    Koval V.V.
    Chernonosov A.A.
    Baranova S.V.
    Biophysics, 2023, 68 (4) : 513 - 518
  • [25] Ice-binding site of surface-bound type III antifreeze protein partially decoupled from water
    Verreault, Dominique
    Alamdari, Sarah
    Roeters, Steven J.
    Pandey, Ravindra
    Pfaendtner, Jim
    Weidner, Tobias
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2018, 20 (42) : 26926 - 26933
  • [26] Functional Analysis of a Bacterial Antifreeze Protein Indicates a Cooperative Effect between Its Two Ice-Binding Domains
    Wang, Chen
    Oliver, Erin E.
    Christner, Brent C.
    Luo, Bing-Hao
    BIOCHEMISTRY, 2016, 55 (28) : 3975 - 3983
  • [27] An ice-binding and tandem beta-sandwich domain-containing protein in Shewanella frigidimarina is a potential new type of ice adhesin
    Vance, Tyler D. R.
    Graham, Laurie A.
    Davies, Peter L.
    FEBS JOURNAL, 2018, 285 (08) : 1511 - 1527
  • [28] Multivalent Display of Antifreeze Proteins by Fusion to Self-Assembling Protein Cages Enhances Ice-Binding Activities
    Phippen, Sean W.
    Stevens, Corey A.
    Vance, Tyler D. R.
    King, Neil P.
    Baker, David
    Davies, Peter L.
    BIOCHEMISTRY, 2016, 55 (49) : 6811 - 6820
  • [29] New Cysteine-Rich Ice-Binding Protein Secreted from Antarctic Microalga, Chloromonas sp.
    Jung, Woongsic
    Campbell, Robert L.
    Gwak, Yunho
    Kim, Jong Im
    Davies, Peter L.
    Jin, EonSeon
    PLOS ONE, 2016, 11 (04):
  • [30] Hyperactive antifreeze protein from an Antarctic sea ice bacterium Colwellia sp has a compound ice-binding site without repetitive sequences
    Hanada, Yuichi
    Nishimiya, Yoshiyuki
    Miura, Ai
    Tsuda, Sakae
    Kondo, Hidemasa
    FEBS JOURNAL, 2014, 281 (16) : 3576 - 3590