Label-free G-Quadruplex aptamer and Thioflavin-T based turn-off fluorescent detection of ethanolamine

被引:20
作者
Bayrac, Abdullah Tahir [1 ]
Acar, Yasemin [1 ]
机构
[1] Karamanoglu Mehmetbey Univ, Dept Bioengn, TR-70100 Karaman, Turkey
关键词
Ethanolamine; Aptasensor; G-quadruplex; Fluorescence molecular rotor; IN-VITRO SELECTION; DNA APTAMERS; BINDING; IDENTIFICATION; CHROMATOGRAPHY; BIOSENSOR; ENZYME; SELEX;
D O I
10.1016/j.dyepig.2019.107788
中图分类号
O69 [应用化学];
学科分类号
081704 ;
摘要
A label free aptasensor based on G-quadruplex forming ethanolamine aptamers and Thioflavin T was developed for the selective and sensitive detection of ethanolamine. The detection system consists of DNA aptamers with four GGG repeats forming a G-quadruplex that Thioflavin T can easily bind to causing high fluorescence emission intensity because of its fluorescence molecular rotor nature. In the presence of ethanolamine, binding of aptamer to its target induces conformational changes causing the separation of Thioflavin T from the complex with a dramatic decrease in fluorescence intensity of reaction mixture. This fluorescence aptasensor has a convenient sensitivity and selectivity with a detection limit of 641 mu M to measure ethanolamine directly in contaminated water samples in a wide linear range. Furthermore this method avoids all complicated modification and labelling steps and thus offers a simple, fast, and cost efficient solution for ethanolamine detection.
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页数:6
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共 49 条
[1]   Ultrasensitive Colorimetric Detection of 17β-Estradiol: The Effect of Shortening DNA Aptamer Sequences [J].
Alsager, Omar A. ;
Kumar, Shalen ;
Zhu, Bicheng ;
Travas-Sejdic, Jadranka ;
McNatty, Kenneth P. ;
Hodgkiss, Justin M. .
ANALYTICAL CHEMISTRY, 2015, 87 (08) :4201-4209
[2]   Low temperature grown ZnO nanotubes as smart sensing electrode for the effective detection of ethanolamine chemical [J].
Ameen, Sadia ;
Akhtar, M. Shaheer ;
Shin, Hyung-Shik .
MATERIALS LETTERS, 2013, 106 :254-258
[3]  
Bagda E, 2017, JOTCSA, V4, P103, DOI [10.18596/jotcsa.288284, DOI 10.18596/JOTCSA.288284]
[4]   Microbial toxicity of ethanolamines [J].
Bakalova, S. ;
Mincheva, V. ;
Doycheva, A. ;
Groudeva, V. ;
Dimkov, R. .
BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2008, 22 (02) :716-720
[5]   SELEX methods on the road to protein targeting with nucleic acid aptamers [J].
Bayat, Payam ;
Nosrati, Rahim ;
Alibolandi, Mona ;
Rafatpanah, Houshang ;
Abnous, Khalil ;
Khedri, Mostafa ;
Ramezani, Mohammad .
BIOCHIMIE, 2018, 154 :132-155
[6]   Selection of DNA aptamers to Streptococcus pneumonia and fabrication of graphene oxide based fluorescent assay [J].
Bayrac, Abdullah Tahir ;
Donmez, Sultan Ilayda .
ANALYTICAL BIOCHEMISTRY, 2018, 556 :91-98
[7]   In Vitro Selection of DNA Aptamers to Glioblastoma Multiforme [J].
Bayrac, Abdullah Tahir ;
Sefah, Kwame ;
Parekh, Parag ;
Bayrac, Ceren ;
Gulbakan, Basri ;
Oktem, Huseyin Avni ;
Tan, Weihong .
ACS CHEMICAL NEUROSCIENCE, 2011, 2 (03) :175-181
[8]   Evaluation of Staphylococcus aureus DNA aptamer by enzyme-linked aptamer assay and isothermal titration calorimetry [J].
Bayrac, Ceren ;
Oktem, Huseyin Avni .
JOURNAL OF MOLECULAR RECOGNITION, 2017, 30 (02)
[9]   In vitro selection of DNA aptamers to anthrax spores with electrochemiluminescence detection [J].
Bruno, JG ;
Kiel, JL .
BIOSENSORS & BIOELECTRONICS, 1999, 14 (05) :457-464
[10]   Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex [J].
Chu, Betty ;
Zhang, Daoning ;
Hwang, Wonseok ;
Paukstelis, Paul J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2018, 140 (47) :16291-16298