Stability and Bifurcation Analysis of a Diffusive miR-9/Hes1 Network With Time Delay

被引:5
作者
Li, Chengxian [1 ]
Liu, Haihong [2 ]
Zhang, Tonghua [3 ]
Zhang, Yuan [4 ]
机构
[1] Yunnan Minzu Univ, Sch Preparatory Educ, Kunming 650504, Yunnan, Peoples R China
[2] Yunnan Normal Univ, Dept Math, Kunming 650500, Yunnan, Peoples R China
[3] Swinburne Univ Technol, Dept Math, Melbourne, Vic 3122, Australia
[4] Yuxi Normal Univ, Dept Math, Yuxi 653100, Peoples R China
基金
中国国家自然科学基金;
关键词
miR-9; Hes1; time delay; diffusion; Hopf bifurcation; Turing-Hopf bifurcation; TURING-HOPF BIFURCATION; PREDATOR-PREY MODEL; GENE-EXPRESSION; HES1; OSCILLATIONS; INSTABILITY; MICRORNAS; MECHANISM; SWITCHES; DYNAMICS;
D O I
10.1109/TCBB.2021.3050006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this paper, a model of miR-9/Hes1 interaction network involving one time delay and diffusion effect under the Neumann boundary conditions is studied. First of all, the stability of the positive equilibrium and the existence of local Hopf bifurcation and Turing-Hopf bifurcation are investigated by analyzing the associated characteristic equation. Second, a algorithm for determining the direction, stability and period of the corresponding bifurcating periodic solutions is presented. The obtained results suggest that the quiescent progenitors (high steady-state Hes1) can be easily excited into oscillation by time delay whereas the differentiated state (low steady-state Hes1) is basically unaffected, and the integrated effect of delay and diffusion can induce the occurrence of spatially inhomogeneous patterns. More importantly, spatially homogeneous/inhomogeneous periodic solutions can exist simultaneously when the diffusion coefficients of Hes1 mRNA and Hes1 protein are appropriately small, conversely, there is only spatially homogeneous periodic solutions. Intriguingly, both temporal patterns and spatial-temporal patterns show that time delay can prompt Hes1 protein to shift from the high concentration state to the low concentration one ("ON" -> "OFF"), where Hes1 protein shows low level whereas miR-9 shows high level. Finally, some numerical examples are presented to verify and visualize theoretical results.
引用
收藏
页码:1870 / 1880
页数:11
相关论文
共 52 条
[1]   The functions of animal microRNAs [J].
Ambros, V .
NATURE, 2004, 431 (7006) :350-355
[2]   Persistent and high levels of Hes1 expression regulate boundary formation in the developing central nervous system [J].
Baek, Joung Hee ;
Hatakeyama, Jun ;
Sakamoto, Susumu ;
Ohtsuka, Toshiyuki ;
Kageyama, Ryoichiro .
DEVELOPMENT, 2006, 133 (13) :2467-2476
[3]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[4]   Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations [J].
Bernard, S ;
Cajavec, B ;
Pujo-Menjouet, L ;
Mackey, MC ;
Herzel, H .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2006, 364 (1842) :1155-1170
[5]   MicroRNA-9 Modulates Hes1 Ultradian Oscillations by Forming a Double-Negative Feedback Loop [J].
Bonev, Boyan ;
Stanley, Peter ;
Papalopulu, Nancy .
CELL REPORTS, 2012, 2 (01) :10-18
[6]   Hopf Bifurcation and Delay-Induced Turing Instability in a Diffusive lac Operon Model [J].
Cao, Xin ;
Song, Yongli ;
Zhang, Tonghua .
INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS, 2016, 26 (10)
[7]   A Dynamic Search Process Underlies MicroRNA Targeting [J].
Chandradoss, Stanley D. ;
Schirle, Nicole T. ;
Szczepaniak, Malwina ;
MacRae, Ian J. ;
Joo, Chirlmin .
CELL, 2015, 162 (01) :96-107
[8]   Turing-Hopf bifurcation and multi-stable spatio-temporal patterns in the Lengyel-Epstein system [J].
Chen, Xianyong ;
Jiang, Weihua .
NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS, 2019, 49 :386-404
[9]   Molecular regulation of stem cell quiescence [J].
Cheung, Tom H. ;
Rando, Thomas A. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2013, 14 (06) :329-340
[10]   microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states [J].
Goodfellow, Marc ;
Phillips, Nicholas E. ;
Manning, Cerys ;
Galla, Tobias ;
Papalopulu, Nancy .
NATURE COMMUNICATIONS, 2014, 5