A three miRNAs signature predicts survival in cervical cancer using bioinformatics analysis
被引:54
作者:
Liang, Bin
论文数: 0引用数: 0
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机构:
China Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
China Med Univ, Key Lab Med Cell Biol, Minist Educ, Coll Basic Med Sci, Shenyang, Peoples R ChinaChina Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
Liang, Bin
[1
,2
]
Li, Yunhui
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h-index: 0
机构:
202 Hosp PLA, Dept Clin Lab, Shenyang, Peoples R ChinaChina Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
Li, Yunhui
[3
]
Wang, Tianjiao
论文数: 0引用数: 0
h-index: 0
机构:
China Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
China Med Univ, Key Lab Med Cell Biol, Minist Educ, Coll Basic Med Sci, Shenyang, Peoples R ChinaChina Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
Wang, Tianjiao
[1
,2
]
机构:
[1] China Med Univ, Dept Bioinformat, Key Lab Cell Biol, Minist Publ Hlth, Shenyang, Peoples R China
[2] China Med Univ, Key Lab Med Cell Biol, Minist Educ, Coll Basic Med Sci, Shenyang, Peoples R China
[3] 202 Hosp PLA, Dept Clin Lab, Shenyang, Peoples R China
Growing evidences showed that a large number of miRNAs were abnormally expressed in cervical cancer tissues and played irreplaceable roles in tumorigenesis, progression and metastasis. The aim of the present study was to identify the differential miRNAs expression between cervical cancer and normal cervical tissues by analyzing the high-throughput miRNA data downloaded from TCGA database. Additionally, we evaluated the prognostic values of the differentially expressed miRNAs and constructed a three-miRNA signature that could effectively predict patient survival. According to the cut-off criteria (P < 0.05 and vertical bar log(2)FC vertical bar > 2.0), a total of 78 differentially expressed miRNAs were identified between cervical cancer tissues and matched normal tissues, including 37 up-regulated miRNAs and 41 down-regulated miRNAs. The Kaplan-Meier survival method revealed the prognostic function of the three miRNAs (miRNA-145, miRNA-200c, and miRNA-218-1). Univariate and multivariate Cox regression analysis showed that the three-miRNA signature was an independent prognostic factor in cervical cancer. The functional enrichment analysis suggested that the target genes of three miRNAs may be involved in various pathways related to cancer, including MAPK, AMPK, focal adhesion, cGMP-PKG, wnt, and mTOR signaling pathway. Taken together, the present study suggested that three-miRNA signature could be used as a prognostic marker in cervical cancer.
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Chandran, Uma R.
;
Medvedeva, Olga P.
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Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Medvedeva, Olga P.
;
Barmada, M. Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Sch Publ Hlth, Dept Human Genet, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USA
UPMC Corp Serv, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Barmada, M. Michael
;
Blood, Philip D.
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Blood, Philip D.
;
Chakka, Anish
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Chakka, Anish
;
Luthra, Soumya
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Luthra, Soumya
;
Ferreira, Antonio
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Ferreira, Antonio
;
Wong, Kim F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Wong, Kim F.
;
Lee, Adrian V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Dept Pharmacol & Cell Biol, Pittsburgh, PA USA
Magee Womens Res Inst, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Lee, Adrian V.
;
Zhang, Zhihui
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Zhang, Zhihui
;
Budden, Robert
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Budden, Robert
;
Scott, J. Ray
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Scott, J. Ray
;
Berndt, Annerose
论文数: 0引用数: 0
h-index: 0
机构:
UPMC Corp Serv, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Berndt, Annerose
;
Berg, Jeremy M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Inst Precis Med, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Berg, Jeremy M.
;
Jacobson, Rebecca S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Precis Med, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
机构:
Tianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R ChinaTianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R China
Chen, Luyue
;
Kang, Chunsheng
论文数: 0引用数: 0
h-index: 0
机构:
Tianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R ChinaTianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R China
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Chandran, Uma R.
;
Medvedeva, Olga P.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Medvedeva, Olga P.
;
Barmada, M. Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Sch Publ Hlth, Dept Human Genet, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USA
UPMC Corp Serv, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Barmada, M. Michael
;
Blood, Philip D.
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Blood, Philip D.
;
Chakka, Anish
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Chakka, Anish
;
Luthra, Soumya
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Luthra, Soumya
;
Ferreira, Antonio
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Ferreira, Antonio
;
Wong, Kim F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Ctr Simulat & Modeling, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Wong, Kim F.
;
Lee, Adrian V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Dept Pharmacol & Cell Biol, Pittsburgh, PA USA
Magee Womens Res Inst, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Lee, Adrian V.
;
Zhang, Zhihui
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Zhang, Zhihui
;
Budden, Robert
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Budden, Robert
;
Scott, J. Ray
论文数: 0引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Pittsburgh Supercomp Ctr, Pittsburgh, PA 15213 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Scott, J. Ray
;
Berndt, Annerose
论文数: 0引用数: 0
h-index: 0
机构:
UPMC Corp Serv, Pittsburgh, PA USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Berndt, Annerose
;
Berg, Jeremy M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Inst Precis Med, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Berg, Jeremy M.
;
Jacobson, Rebecca S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Canc, Pittsburgh, PA 15260 USA
Univ Pittsburgh, Inst Precis Med, Pittsburgh, PA 15260 USAUniv Pittsburgh, Sch Med, Dept Biomed Informat, Pittsburgh, PA 15260 USA
机构:
Tianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R ChinaTianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R China
Chen, Luyue
;
Kang, Chunsheng
论文数: 0引用数: 0
h-index: 0
机构:
Tianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R ChinaTianjin Med Univ, Gen Hosp, Tianjin Neurol Inst, Lab Neurooncol,Dept Neurosurg, Tianjin, Peoples R China