51V NMR chemical shifts calculated from QM/MM models of vanadium chloroperoxidase

被引:88
|
作者
Waller, Mark P. [1 ]
Buehl, Michael [1 ]
Geethalakshmi, K. R. [1 ]
Wang, Dongqi [1 ]
Thiel, Walter [1 ]
机构
[1] Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
关键词
density functional calculations; haloperoxidase; NMR spectroscopy; vanadium; DENSITY-FUNCTIONAL THEORY; CONTAINING ENZYME CHLOROPEROXIDASE; BASIS-SETS; ELECTRONIC-STRUCTURE; SHIELDING CONSTANTS; CORRELATION-ENERGY; DYNAMICS; MECHANICS; RESONANCE; STATE;
D O I
10.1002/chem.200700295
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
V-51 NMR chemical shifts calculated from QM/MM-optimized (QM = quantum mechanical; MM = molecular mechanical) models of vanadium-dependent chloroperoxidase (VCPO) are presented. An extensive number of protonation states for the vanadium cofactor (active site of the protein) and a number of probable positional isomers for each of the protonation states are considered. The size of the QM region is increased incrementally to observe the convergence behavior of the V-51 NMR chemical shifts. A total of 40 models are assessed by comparison to experimental solid-state V-51 NMR results recently reported in the literature. Isotropic chemical shifts are found to be a poor indicator of the protonation state; however, anisotropic chemical shifts and the nuclear quadrupole tensors appear to be sensitive to changes in the proton environment of the vanadium nuclei. This detailed investigation of the V-51 NMR chemical shifts computed from QM/MM models provides further evidence that the ground state is either a triply protonated (one axial water and one equatorial hydroxyl group) or a doubly protonated vanadate moiety in VCPO. Particular attention is given to the electrostatic and geometric effects of the protein environment. This is the first study to compute anisotropic NMR chemical shifts from QM/MM models of an active metalloprotein for direct comparison with solid-state MAS NMR data. This theoretical approach enhances the potential use of experimental solid-state NMR spectroscopy for the structural determination of metalloproteins.
引用
收藏
页码:4723 / 4732
页数:10
相关论文
共 23 条
  • [1] 51V NMR Chemical Shifts Calculated from QM/MM Models of Peroxo Forms of Vanadium Haloperoxidases
    Geethalakshmi, K. R.
    Waller, Mark P.
    Thiel, Walter
    Buehl, Michael
    JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (13): : 4456 - 4465
  • [2] Medium effects on 51V NMR chemical shifts:: A density functional study
    Bühl, M
    Parrinello, M
    CHEMISTRY-A EUROPEAN JOURNAL, 2001, 7 (20) : 4487 - 4494
  • [3] Correlation between 51V NMR chemical shift and reactivity of oxovanadium(V) catalysts for ethylene polymerization
    Bühl, M
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 1998, 37 (1-2) : 142 - 144
  • [4] DFT Calculations of 51V Solid-State NMR Parameters of Vanadium(V) Model Complexes
    Gutmann, Torsten
    Schweitzer, Annika
    Waechtler, Maria
    Breitzke, Hergen
    Blichholz, Axel
    Plass, Winfried
    Buntkowsky, Gerd
    ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS, 2008, 222 (8-9): : 1389 - 1406
  • [5] A polarisable QM/MM description of NMR chemical shifts of a photoreceptor protein
    Hashem, Shaima
    Cupellini, Lorenzo
    Lipparini, Filippo
    Mennucci, Benedetta
    MOLECULAR PHYSICS, 2020, 118 (19-20)
  • [6] 51V magic angle spinning NMR spectroscopy and quantum chemical calculations in vanadium bio-inorganic systems: current perspective
    Gupta, Rupal
    Yehl, Jenna
    Li, Mingyue
    Polenova, Tatyana
    CANADIAN JOURNAL OF CHEMISTRY, 2015, 93 (09) : 929 - 937
  • [7] Solid-state 51V NMR for characterization of vanadium-containing systems
    Lapina, OB
    Shubin, AA
    Khabibulin, DF
    Terskikh, VV
    Bodart, PR
    Amoureux, JP
    CATALYSIS TODAY, 2003, 78 (1-4) : 91 - 104
  • [8] 51V NMR Crystallography of Vanadium Chloroperoxidase and Its Directed Evolution P395D/L241V/T343A Mutant: Protonation Environments of the Active Site
    Gupta, Rupal
    Hou, Guangjin
    Renirie, Rokus
    Wever, Ron
    Polenova, Tatyana
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (16) : 5618 - 5628
  • [9] 51V solid-state NMR investigations and DFT studies of model compounds for vanadium haloperoxidases
    Schweitzer, Annika
    Gutmann, Torsten
    Waechtler, Maria
    Breitzke, Hergen
    Buchholz, Axel
    Plass, Winfried
    Buntkowsky, Gerd
    SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2008, 34 (1-2) : 52 - 67
  • [10] Redox Activity in a Vanadium(V)-o-Dioxolene Complex Is Modulated by Protonation State As Indicated by 51V Solid-State NMR Spectroscopy and Density Functional Theory
    Chatterjee, Pabitra B.
    Goncharov-Zapata, Olga
    Hou, Guangjin
    Dmitrenko, Olga
    Polenova, Tatyana
    Crans, Debbie C.
    EUROPEAN JOURNAL OF INORGANIC CHEMISTRY, 2012, (29) : 4644 - 4651