Feature Selection for Cancer Classification Based on Support Vector Machine

被引:3
|
作者
Luo, Wei [1 ]
Wang, Lipo [2 ]
Sun, Jingjing [1 ]
机构
[1] Xiangtan Univ, Coll Informat Engn, Xiangtan, Hunan, Peoples R China
[2] Nanyang Technol Univ, Sch Elect & Elect Engn, Singapore, Singapore
关键词
GENE-EXPRESSION DATA; PATTERNS;
D O I
10.1109/GCIS.2009.45
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Feature selection plays an important role in cancer classification, for gene expression data usually have a large number of dimensions and relatively a small number of samples In this paper we use the support vector machine (SVM) for cancer classification. We propose a mixed two-step feature selection method The first step uses a modified t-test method to select discriminatory features The second step extracts principal components from the top-ranked genes based on the modified t-test method We tested our two-step method in three data sets, i e, the lymphoma data set, the SRBCT data set, and the ovarian cancer data set. The results in all the three data sets show our two-step methods is able to achieve 100% accuracy with much fewer genes than other published results
引用
收藏
页码:422 / +
页数:2
相关论文
共 50 条
  • [41] Model selection for support vector machine classification
    Gold, C
    Sollich, P
    NEUROCOMPUTING, 2003, 55 (1-2) : 221 - 249
  • [42] Feature clustering based support vector machine recursive feature elimination for gene selection
    Huang, Xiaojuan
    Zhang, Li
    Wang, Bangjun
    Li, Fanzhang
    Zhang, Zhao
    APPLIED INTELLIGENCE, 2018, 48 (03) : 594 - 607
  • [43] Feature clustering based support vector machine recursive feature elimination for gene selection
    Xiaojuan Huang
    Li Zhang
    Bangjun Wang
    Fanzhang Li
    Zhao Zhang
    Applied Intelligence, 2018, 48 : 594 - 607
  • [44] ESVM: Evolutionary support vector machine for automatic feature selection and classification of microarray data
    Huang, Hui-Ling
    Chang, Fang-Lin
    BIOSYSTEMS, 2007, 90 (02) : 516 - 528
  • [45] Classification of quickbird image with maximal mutual information feature selection and support vector machine
    Wu Bo
    Xiong Zhu-guo
    Chen Yun-zhi
    Zhao Yin-di
    PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON MINING SCIENCE & TECHNOLOGY (ICMST2009), 2009, 1 (01): : 1165 - 1172
  • [46] Feature Selection and Mass Classification Using Particle Swarm Optimization and Support Vector Machine
    Wong, Man To
    He, Xiangjian
    Yeh, Wei-Chang
    Ibrahim, Zaidah
    Chung, Yuk Ying
    NEURAL INFORMATION PROCESSING, ICONIP 2014, PT III, 2014, 8836 : 439 - 446
  • [47] Evaluation of Feature Selection Method for Classification of Data Using Support Vector Machine Algorithm
    Veeraswamy, A.
    Balamurugan, S. Appavu Alias
    Kannan, E.
    ICT AND CRITICAL INFRASTRUCTURE: PROCEEDINGS OF THE 48TH ANNUAL CONVENTION OF COMPUTER SOCIETY OF INDIA - VOL I, 2014, 248 : 179 - 186
  • [48] Feature selection for damage degree classification of planetary gearboxes using support vector machine
    Qu, J.
    Liu, Z.
    Zuo, M. J.
    Huang, H-Z
    PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART C-JOURNAL OF MECHANICAL ENGINEERING SCIENCE, 2011, 225 (C9) : 2250 - 2264
  • [49] Hybrid Method Based on Information Gain and Support Vector Machine for Gene Selection in Cancer Classification
    Gao, Lingyun
    Ye, Mingquan
    Lu, Xiaojie
    Huang, Daobin
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2017, 15 (06) : 389 - 395
  • [50] Combined Feature Selection and Cancer Prognosis Using Support Vector Machine Regression
    Sun, Bing-Yu
    Zhu, Zhi-Hua
    Li, Jiuyong
    Bin Linghu
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2011, 8 (06) : 1671 - 1677