Accurate Retinal Vessel Segmentation in Color Fundus Images via Fully Attention-Based Networks

被引:55
作者
Li, Kaiqi [1 ]
Qi, Xingqun [1 ]
Luo, Yiwen [1 ]
Yao, Zeyi [1 ]
Zhou, Xiaoguang [1 ]
Sun, Muyi [1 ,2 ]
机构
[1] Beijing Univ Posts & Telecommun, Sch Automat, Beijing 100876, Peoples R China
[2] Chinese Acad Sci, Inst Automat, Natl Lab Pattern Recognit, Ctr Res Intelligent Percept & Comp, Beijing, Peoples R China
关键词
Image segmentation; Retinal vessels; Semantics; Feature extraction; Biomedical imaging; Task analysis; Attention mechanism; deep learning; image processing; retinal vessel segmentation; BLOOD-VESSELS;
D O I
10.1109/JBHI.2020.3028180
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Automatic retinal vessel segmentation is important for the diagnosis and prevention of ophthalmic diseases. The existing deep learning retinal vessel segmentation models always treat each pixel equally. However, the multi-scale vessel structure is a vital factor affecting the segmentation results, especially in thin vessels. To address this crucial gap, we propose a novel Fully Attention-based Network (FANet) based on attention mechanisms to adaptively learn rich feature representation and aggregate the multi-scale information. Specifically, the framework consists of the image pre-processing procedure and the semantic segmentation networks. Green channel extraction (GE) and contrast limited adaptive histogram equalization (CLAHE) are employed as pre-processing to enhance the texture and contrast of retinal blood images. Besides, the network combines two types of attention modules with the U-Net. We propose a lightweight dual-direction attention block to model global dependencies and reduce intra-class inconsistencies, in which the weights of feature maps are updated based on the semantic correlation between pixels. The dual-direction attention block utilizes horizontal and vertical pooling operations to produce the attention map. In this way, the network aggregates global contextual information from semantic-closer regions or a series of pixels belonging to the same object category. Meanwhile, we adopt the selective kernel (SK) unit to replace the standard convolution for obtaining multi-scale features of different receptive field sizes generated by soft attention. Furthermore, we demonstrate that the proposed model can effectively identify irregular, noisy, and multi-scale retinal vessels. The abundant experiments on DRIVE, STARE, and CHASE_DB1 datasets show that our method achieves state-of-the-art performance.
引用
收藏
页码:2071 / 2081
页数:11
相关论文
共 57 条
[1]  
Agarap A. F., 2018, DEEP LEARNING USING, V2, P8375
[2]  
Alom M.Z., 2018, CoRR
[3]  
Azzopardi G., MED IMAGE ANAL, V19, p46C57
[4]  
Boski M, 2017, 2017 10TH INTERNATIONAL WORKSHOP ON MULTIDIMENSIONAL (ND) SYSTEMS (NDS)
[5]   DETECTION OF BLOOD-VESSELS IN RETINAL IMAGES USING TWO-DIMENSIONAL MATCHED-FILTERS [J].
CHAUDHURI, S ;
CHATTERJEE, S ;
KATZ, N ;
NELSON, M ;
GOLDBAUM, M .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 1989, 8 (03) :263-269
[6]   Encoder-Decoder with Atrous Separable Convolution for Semantic Image Segmentation [J].
Chen, Liang-Chieh ;
Zhu, Yukun ;
Papandreou, George ;
Schroff, Florian ;
Adam, Hartwig .
COMPUTER VISION - ECCV 2018, PT VII, 2018, 11211 :833-851
[7]   DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs [J].
Chen, Liang-Chieh ;
Papandreou, George ;
Kokkinos, Iasonas ;
Murphy, Kevin ;
Yuille, Alan L. .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2018, 40 (04) :834-848
[8]  
Chen LB, 2017, IEEE INT SYMP NANO, P1, DOI 10.1109/NANOARCH.2017.8053709
[9]  
Chen YP, 2018, ADV NEUR IN, V31
[10]  
Ding Henghui, 2018, PROC CVPR IEEE, DOI DOI 10.1109/CVPR.2018.00254