共 8 条
Predicting AID off-targets: A step forward
被引:4
作者:

Reynaud, Claude-Agnes
论文数: 0 引用数: 0
h-index: 0

Weill, Jean-Claude
论文数: 0 引用数: 0
h-index: 0
机构:
关键词:
SOMATIC HYPERMUTATION;
B-CELLS;
D O I:
10.1084/jem.20180231
中图分类号:
R392 [医学免疫学];
Q939.91 [免疫学];
学科分类号:
100102 ;
摘要:
In this issue of JEM, Alvarez-Prado et al. (https://doi.org/10.1084/jem.20171738) designed a DNA capture library allowing them to identify 275 genes targeted by AID in mouse germinal center B cells. Using the molecular features of these genes to feed a machine-learning algorithm, they determined that high-density RNA PolII and Spt5 binding-found in 2.3% of the genes-are the best predictors of AID specificity.
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页码:721 / 722
页数:2
相关论文
共 8 条
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