A novel microseeding method for the crystallization of membrane proteins in lipidic cubic phase

被引:13
作者
Kolek, Stefan Andrew [1 ]
Braeuning, Bastian [2 ]
Stewart, Patrick Douglas Shaw [1 ]
机构
[1] Douglas Instruments Ltd, East Garston RG17 7HD, Hungerford, England
[2] Tech Univ Munich, Dept Chem, Lichtenbergstr 4, D-85748 Garching, Germany
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2016年 / 72卷
关键词
membrane-protein crystallization; microseeding; lipidic cubic phase; microseed matrix screening; OPTIMIZATION; COMPLEXES; CRYSTALS;
D O I
10.1107/S2053230X16004118
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Random microseed matrix screening (rMMS), in which seed crystals are added to random crystallization screens, is an important breakthrough in soluble protein crystallization that increases the number of crystallization hits that are available for optimization. This greatly increases the number of soluble protein structures generated every year by typical structural biology laboratories. Inspired by this success, rMMS has been adapted to the crystallization of membrane proteins, making LCP seed stock by scaling up LCP crystallization conditions without changing the physical and chemical parameters that are critical for crystallization. Seed crystals are grown directly in LCP and, as with conventional rMMS, a seeding experiment is combined with an additive experiment. The new method was used with the bacterial integral membrane protein OmpF, and it was found that it increased the number of crystallization hits by almost an order of magnitude: without microseeding one new hit was found, whereas with LCP-rMMS eight new hits were found. It is anticipated that this new method will lead to better diffracting crystals of membrane proteins. A method of generating seed gradients, which allows the LCP seed stock to be diluted and the number of crystals in each LCP bolus to be reduced, if required for optimization, is also demonstrated.
引用
收藏
页码:307 / 312
页数:6
相关论文
共 19 条
[1]   Structure of arylamine N-acetyltransferase from Mycobacterium tuberculosis determined by cross-seeding with the homologous protein from M. marinum: triumph over adversity [J].
Abuhammad, Areej ;
Lowe, Edward D. ;
McDonough, Michael A. ;
Stewart, Patrick D. Shaw ;
Kolek, Stefan A. ;
Sim, Edith ;
Garman, Elspeth F. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2013, 69 :1433-1446
[2]   A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes [J].
Caffrey, Martin .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 :3-18
[3]   Nano-volume plates with excellent optical properties for fast, inexpensive crystallization screening of membrane proteins [J].
Cherezov, V ;
Caffrey, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2003, 36 :1372-1377
[4]   An automated microseed matrix-screening method for protein crystallization [J].
D'Arcy, Allan ;
Villard, Frederic ;
Marsh, May .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2007, 63 :550-554
[5]   Microseed matrix screening for optimization in protein crystallization: what have we learned? [J].
D'Arcy, Allan ;
Bergfors, Terese ;
Cowan-Jacob, Sandra W. ;
Marsh, May .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 :1117-1126
[6]   Structure of Escherichia coli OmpF porin from lipidic mesophase [J].
Efremov, Rouslan G. ;
Sazanov, Leonid A. .
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 178 (03) :311-318
[7]   Microseed matrix screening to improve crystals of yeast cytosine deaminase [J].
Ireton, GC ;
Stoddard, BL .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :601-605
[8]   Membrane protein structure determination The next generation [J].
Moraes, Isabel ;
Evans, Gwyndaf ;
Sanchez-Weatherby, Juan ;
Newstead, Simon ;
Stewart, Patrick D. Shaw .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2014, 1838 (01) :78-87
[9]  
Obmolova G., 2011, MICROSEED MATRIX SCR
[10]   Protein crystallization with microseed matrix screening: application to human germline antibody Fabs [J].
Obmolova, Galina ;
Malia, Thomas J. ;
Teplyakov, Alexey ;
Sweet, Raymond W. ;
Gilliland, Gary L. .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 :1107-1115