GALNS Mutations in Indian Patients With Mucopolysaccharidosis IVA

被引:31
作者
Bidchol, Abdul Mueed [1 ]
Dalal, Ashwin [2 ]
Shah, Hitesh [3 ]
Suryanarayana, S. [4 ,5 ]
Nampoothiri, Sheela [6 ]
Kabra, Madhulika [7 ]
Gupta, Neerja [7 ]
Danda, Sumita [8 ]
Gowrishankar, Kalpana [9 ]
Phadke, Shubha R. [10 ]
Kapoor, Seema [11 ]
Kamate, Mahesh [12 ]
Verma, I. C. [13 ]
Puri, Ratna Dua [13 ]
Sankar, V. H. [14 ]
Devi, A. Radha Rama [15 ]
Patil, S. J. [16 ]
Ranganath, Prajnya [2 ,17 ]
Jain, S. Jamal Md Nurul [2 ]
Agarwal, Meenal [10 ]
Singh, Ankur [11 ]
Mishra, Pallavi [7 ]
Tamhankar, Parag M. [18 ]
Gopinath, Puthiya Mundyat [19 ]
Nagarajaram, H. A. [4 ,5 ]
Satyamoorthy, Kapaettu [19 ]
Girisha, Katta Mohan [1 ]
机构
[1] Manipal Univ, Kasturba Med Coll, Dept Med Genet, Manipal 576104, Karnataka, India
[2] Ctr DNA Fingerprinting & Diagnost, Div Diagnost, Hyderabad, Telangana, India
[3] Manipal Univ, Kasturba Med Coll, Dept Orthoped, Pediat Orthoped Serv, Manipal 576104, Karnataka, India
[4] Ctr DNA Fingerprinting & Diagnost, Lab Computat Biol, Hyderabad, Telangana, India
[5] Ctr DNA Fingerprinting & Diagnost, Bioinformat Facil, Hyderabad, Telangana, India
[6] Amrita Inst Med Sci & Res Ctr, Dept Pediat Genet, Kochi r, Kerala, India
[7] All India Inst Med Sci, Dept Pediat, Genet Unit, New Delhi, India
[8] Christian Med Coll & Hosp, Dept Clin Genet, Vellore, Tamil Nadu, India
[9] Kanchi Kamakoti Childs Trust Hosp, Childs Trust Med Res Fdn, Dept Med Genet, Madras, Tamil Nadu, India
[10] Sanjay Gandhi Postgrad Inst Med Sci, Dept Med Genet, Lucknow, Uttar Pradesh, India
[11] Moulana Azad Med Coll, Dept Pediat, New Delhi, India
[12] KLE Univ JNMC, Belgaum, Karnataka, India
[13] Sir Ganga Ram Hosp, Ctr Med Genet, New Delhi, India
[14] Govt Med Coll, SAT Hosp, Dept Pediat, Genet Clin, Thiruvananthapuram, Kerala, India
[15] Rainbow Children Hosp, Div Genet, Hyderabad, Andhra Pradesh, India
[16] Naryana Hrudayalaya Inst Med Sci, Bangalore, Karnataka, India
[17] Nizams Inst Med Sci, Dept Med Genet, Hyderabad, Andhra Pradesh, India
[18] Natl Inst Res Reprod Hlth, Genet Res Ctr, Bombay, Maharashtra, India
[19] Manipal Univ, Sch Life Sci, Div Biotechnol, Manipal 576104, Karnataka, India
关键词
diagnosis; GALNS gene; genetics; India; morquio syndrome A; mucopolysaccharidosis IVA; mutation; N-ACETYLGALACTOSAMINE-6-SULFATE SULFATASE; SEQUENCE-ALIGNMENT; MOLECULAR ANALYSIS; KERATAN SULFATE; MORQUIO-DISEASE; COMMON MUTATION; IDENTIFICATION; GENE; HETEROGENEITY; SUBSTITUTIONS;
D O I
10.1002/ajmg.a.36735
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mucopolysaccharidosis IV A (Morquio syndrome A, MPS IVA) is a lysosomal storage disease caused by the deficiency of N-acetylgalactosamine-6-sulfatase (GALNS). The mutation spectrum in this condition is yet to be determined in Indians. We aimed to analyze the mutations in the GALNS gene in Asian Indians with MPS IVA. All the exons and the adjacent intronic regions of the gene were amplified and sequenced in sixty-eight unrelated Indian families. We identified 136 mutant alleles comprising of 40 different mutations. We report twenty-two novel mutations that comprise of seventeen missense (p.Asn32Thr, p.Leu36Arg, p.Pro52Leu, p.Pro77Ser, p.Cys79Arg, p.His142Pro, p.Tyr191Asp, p.Asn204Thr, p.Gly188Ser, p.Phe216Ser, p.Trp230Cys, p.Ala291Ser, p.Gly317Arg, p.His329Pro, p.Arg386Ser, p.Glu450Gly, p.Cys501Ser), three splice-site variants (c.120+1G>C, c.1003-3C>G, c.1139+1G>A), one nonsense mutation (p.Gln414*) and one frameshift mutation (p.Pro420Leufs*440). Eighteen mutations have been reported earlier. Among these p.Ser287Leu (8.82%), p.Phe216Ser (7.35%), p.Asn32Thr (6.61%) and p.Ala291Ser (5.88%) were the most frequent mutations in Indian patients but were rare in the mutational profiles reported in other populations. These results indicate that the Indian patients may have a distinct mutation spectrum compared to those of other populations. Mutant alleles in exon 1, 7 and 8 accounted for 44.8% of the mutations, and sequencing of these exons initially may be a cost-effective approach in Asian Indian patients. This is the largest study on molecular analysis of patients with MPS IVA reported in the literature, and the first report from India. (c) 2014 Wiley Periodicals, Inc.
引用
收藏
页码:2793 / 2801
页数:9
相关论文
共 45 条
[1]   Hansa: An Automated Method for Discriminating Disease and Neutral Human nsSNPs [J].
Acharya, Vishal ;
Nagarajaram, Hampapathalu A. .
HUMAN MUTATION, 2012, 33 (02) :332-337
[2]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[5]  
BRADFORD MM, 1976, ANAL BIOCHEM, V72, P248, DOI 10.1016/0003-2697(76)90527-3
[6]   PREDICTION OF HUMAN MESSENGER-RNA DONOR AND ACCEPTOR SITES FROM THE DNA-SEQUENCE [J].
BRUNAK, S ;
ENGELBRECHT, J ;
KNUDSEN, S .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 220 (01) :49-65
[7]  
Bunge S, 1997, HUM MUTAT, V10, P223
[8]   Multiple sequence alignment with the Clustal series of programs [J].
Chenna, R ;
Sugawara, H ;
Koike, T ;
Lopez, R ;
Gibson, TJ ;
Higgins, DG ;
Thompson, JD .
NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3497-3500
[9]  
Choi YH, 2012, PLOS ONE, V7, DOI [10.1371/journal.pone.0039927, 10.1371/journal.pone.0046688]
[10]   Analysis of the WISP3 gene in Indian families with progressive pseudorheumatoid dysplasia [J].
Dalal, Ashwin ;
Bhavani, Lakshmi G. ;
Togarrati, Padma Priya ;
Bierhals, Tatjana ;
Nandineni, Madhusudan R. ;
Danda, Sumita ;
Danda, Debashish ;
Shah, Hitesh ;
Vijayan, Sandeep ;
Gowrishankar, Kalpana ;
Phadke, Shubha R. ;
Bidchol, Abdul Mueed ;
Rao, Anand Prahalad ;
Nampoothiri, Sheela ;
Kutsche, Kerstin ;
Girisha, K. M. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2012, 158A (11) :2820-2828