Cellulolytic potential under environmental changes in microbial communities from grassland litter

被引:61
作者
Berlemont, Renaud [1 ,2 ]
Allison, Steven D. [1 ,3 ]
Weihe, Claudia [3 ]
Lu, Ying [3 ]
Brodie, Eoin L. [4 ]
Martiny, Jennifer B. H. [3 ,5 ]
Martiny, Adam C. [1 ,3 ]
机构
[1] Univ Calif Irvine, Dept Earth Syst Sci, Irvine, CA 92697 USA
[2] Calif State Univ Long Beach, Dept Biol Sci, Long Beach, CA 90840 USA
[3] Univ Calif Irvine, Dept Ecol & Evolut Biol, Irvine, CA 92717 USA
[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Earth Sci, Dept Ecol, Berkeley, CA 94720 USA
[5] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA
关键词
cellulase; metagenomics; leaf litter; global change; microbial community composition; SOIL BACTERIAL; DIVERSITY; RESPONSES; DROUGHT; IDENTIFICATION; GENOME; GENES; DESICCATION; RESISTANCE; IMPACT;
D O I
10.3389/fmicb.2014.00639
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In many ecosystems, global changes are likely to profoundly affect microorganisms. In Southern California, changes in precipitation and nitrogen deposition may influence the composition and functional potential of microbial communities and their resulting ability to degrade plant material. To test whether such environmental changes impact the distribution of functional groups involved in leaf litter degradation, we determined how the genomic diversity of microbial communities in a semi-arid grassland ecosystem changed under reduced precipitation or increased N deposition. We monitored communities seasonally over a period of 2 years to place environmental change responses into the context of natural variation. Fungal and bacterial communities displayed strong seasonal patterns, Fungi being mostly detected during the dry season whereas Bacteria were common during wet periods. Most putative cellulose degraders were associated with 33 bacterial genera and predicted to constitute 18% of the microbial community. Precipitation reduction reduced bacterial abundance and cellulolytic potential whereas nitrogen addition did not affect the cellulolytic potential of the microbial community. Finally, we detected a strong correlation between the frequencies of genera of putative cellulose degraders and cellulase genes. Thus, microbial taxonomic composition was predictive of cellulolytic potential. This work provides a framework for how environmental changes affect microorganisms responsible for plant litter deconstruction.
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页数:10
相关论文
共 65 条
[1]   A trait-based approach for modelling microbial litter decomposition [J].
Allison, S. D. .
ECOLOGY LETTERS, 2012, 15 (09) :1058-1070
[2]   Resistance, resilience, and redundancy in microbial communities [J].
Allison, Steven D. ;
Martiny, Jennifer B. H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 :11512-11519
[3]   Microbial abundance and composition influence litter decomposition response to environmental change [J].
Allison, Steven D. ;
Lu, Ying ;
Weihe, Claudia ;
Goulden, Michael L. ;
Martiny, Adam C. ;
Treseder, Kathleen K. ;
Martiny, Jennifer B. H. .
ECOLOGY, 2013, 94 (03) :714-725
[4]   Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland [J].
Alster, Charlotte J. ;
German, Donovan P. ;
Lu, Ying ;
Allison, Steven D. .
SOIL BIOLOGY & BIOCHEMISTRY, 2013, 64 :68-79
[5]   Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria [J].
Anderson, Iain ;
Abt, Birte ;
Lykidis, Athanasios ;
Klenk, Hans-Peter ;
Kyrpides, Nikos ;
Ivanova, Natalia .
PLOS ONE, 2012, 7 (06)
[6]  
[Anonymous], 2012, R LANG ENV STAT COMP
[7]   Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations [J].
Barabote, Ravi D. ;
Xie, Gary ;
Leu, David H. ;
Normand, Philippe ;
Necsulea, Anamaria ;
Daubin, Vincent ;
Medigue, Claudine ;
Adney, William S. ;
Xu, Xin Clare ;
Lapidus, Alla ;
Parales, Rebecca E. ;
Detter, Chris ;
Pujic, Petar ;
Bruce, David ;
Lavire, Celine ;
Challacombe, Jean F. ;
Brettin, Thomas S. ;
Berry, Alison M. .
GENOME RESEARCH, 2009, 19 (06) :1033-1043
[8]   Responses of soil bacterial and fungal communities to extreme desiccation and rewetting [J].
Barnard, Romain L. ;
Osborne, Catherine A. ;
Firestone, Mary K. .
ISME JOURNAL, 2013, 7 (11) :2229-2241
[9]   Regulation of the expression of a gene encoding β-endoglucanase secreted by Myxococcus xanthus during growth:: role of genes involved in developmental regulation [J].
Bensmail, L ;
Quillet, L ;
Petit, F ;
Barray, S ;
Guespin-Michel, JF .
RESEARCH IN MICROBIOLOGY, 1998, 149 (05) :319-326
[10]   Phylogenetic Distribution of Potential Cellulases in Bacteria [J].
Berlemont, Renaud ;
Martiny, Adam C. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (05) :1545-1554