Enzymatic construction of metal-mediated nucleic acid base pairs

被引:13
作者
Flamme, Marie [1 ,2 ,3 ]
Figazzolo, Chiara [1 ,2 ,4 ]
Gasser, Gilles [3 ]
Hollenstein, Marcel [1 ]
机构
[1] Inst Pasteur, Dept Struct Biol & Chem, Lab Bioorga Chem Nucle Acids, CNRS UMR3523, 28 Rue Docteur Roux, F-75724 Paris 15, France
[2] Univ Paris, 12 Rue Ecole Med, F-75006 Paris, France
[3] PSL Univ, Inst Chem Life & Hlth Sci, Lab Inorgan Chem Biol, Chim ParisTech,CNRS, F-75005 Paris, France
[4] Ctr Rech Interdisciplinaires CRI, 8 Rue Charles V, F-75004 Paris, France
关键词
DOUBLE-STRANDED POLYNUCLEOTIDES; HG-II-T; CRYSTAL-STRUCTURE; DNA-DUPLEX; CROSS-LINKING; SEMISYNTHETIC ORGANISM; POLYMERASE RECOGNITION; REVERSIBLE-REACTION; MASS-SPECTROMETRY; SILVER(I) IONS;
D O I
10.1093/mtomcs/mfab016
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Artificial metal base pairs have become increasingly important in nucleic acids chemistry due to their high thermal stability, water solubility, orthogonality to natural base pairs, and low cost of production. These interesting properties combined with ease of chemical and enzymatic synthesis have prompted their use in several practical applications, including the construction of nanomolecular devices, ions sensors, and metal nanowires. Chemical synthesis of metal base pairs is highly efficient and enables the rapid screening of novel metal base pair candidates. However, chemical synthesis is limited to rather short oligonucleotides and requires rather important synthetic efforts. Herein, we discuss recent progress made for the enzymatic construction of metal base pairs that can alleviate some of these limitations. First, we highlight the possibility of generating metal base pairs using canonical nucleotides and then describe how modified nucleotides can be used in this context. We also provide a description of the main analytical techniques used for the analysis of the nature and the formation of metal base pairs together with relevant examples of their applications.
引用
收藏
页数:20
相关论文
共 50 条
[21]   Metal-dependent activity control of a compact-sized 8-17 DNAzyme based on metal-mediated unnatural base pairing [J].
Takezawa, Yusuke ;
Hu, Lingyun ;
Nakama, Takahiro ;
Shionoya, Mitsuhiko .
CHEMICAL COMMUNICATIONS, 2024, 60 (03) :288-291
[22]   Metal-mediated base pairing in DNA involving the artificial nucleobase imidazole-4-carboxylate [J].
Sandmann, Nikolas ;
Defayay, Denise ;
Hepp, Alexander ;
Mueller, Jens .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2019, 191 :85-93
[23]   Towards the enzymatic formation of artificial metal base pairs with a carboxy-imidazole-modified nucleotide [J].
Rothlisberger, Pascal ;
Levi-Acobas, Fabienne ;
Sarac, Ivo ;
Marliere, Philippe ;
Herdewijn, Piet ;
Hollenstein, Marcel .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2019, 191 :154-163
[24]   Silver Ions in Non-canonical DNA Base Pairs: Metal-Mediated Mismatch Stabilization of 2′-Deoxyadenosine and 7-Deazapurine Derivatives with 2′-Deoxycytidine and 2′-Deoxyguanosine [J].
Yang, Haozhe ;
Seela, Frank .
CHEMISTRY-A EUROPEAN JOURNAL, 2016, 22 (37) :13336-13346
[25]   Metal-Mediated Self-Assembly of a β-Sandwich Protein [J].
Crowley, Peter B. ;
Matias, Pedro M. ;
Khan, Amir R. ;
Roessle, Manfred ;
Svergun, Dmitri I. .
CHEMISTRY-A EUROPEAN JOURNAL, 2009, 15 (46) :12672-12680
[26]   Main group and transition metal-mediated phosphaalkyne oligomerizations [J].
Chirila, Andrei ;
Wolf, Robert ;
Slootweg, J. Chris ;
Lammertsma, Koop .
COORDINATION CHEMISTRY REVIEWS, 2014, 270 :57-74
[27]   HgII/AgI-mediated base pairs and their NMR spectroscopic studies [J].
Dairaku, Takenori ;
Furuita, Kyoko ;
Sato, Hajime ;
Sebera, Jakub ;
Nakashima, Katsuyuki ;
Ono, Akira ;
Sychrovsky, Vladimir ;
Kojima, Chojiro ;
Tanaka, Yoshiyuki .
INORGANICA CHIMICA ACTA, 2016, 452 :34-42
[28]   Towards polymerase-mediated synthesis of artificial RNA-DNA metal base pairs [J].
Levi-Acobas, Fabienne ;
McKenzie, Luke K. ;
Hollenstein, Marcel .
NEW JOURNAL OF CHEMISTRY, 2022, 46 (10) :4871-4876
[29]   RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs [J].
Bhattacharyya, Dhananjay ;
Halder, Sukanya ;
Basu, Sankar ;
Mukherjee, Debasish ;
Kumar, Prasun ;
Bansal, Manju .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2017, 31 (02) :219-235
[30]   Metal-Mediated Assembly of 1,N6-Ethenoadenine: From Surfaces to DNA Duplexes [J].
Mandal, Soham ;
Wang, Can ;
Prajapati, Rajneesh K. ;
Koesters, Jutta ;
Verma, Sandeep ;
Chi, Lifeng ;
Mueller, Jens .
INORGANIC CHEMISTRY, 2016, 55 (14) :7041-7050