INTEGRATED TRANSCRIPTIONAL AND METABOLIC PROFILING IN HUMAN ENDOTOXEMIA

被引:10
作者
Kamisoglu, Kubra [1 ]
Calvano, Steve E. [2 ]
Coyle, Susette M. [2 ,3 ]
Corbett, Siobhan A. [2 ]
Androulakis, Ioannis P. [1 ,2 ,3 ]
机构
[1] Rutgers State Univ, Dept Chem & Biochem Engn, Piscataway, NJ 08854 USA
[2] Rutgers Robert Wood Johnson Med Sch, Dept Surg, New Brunswick, NJ USA
[3] Rutgers State Univ, Dept Biomed Engn, Piscataway, NJ 08854 USA
来源
SHOCK | 2014年 / 42卷 / 06期
基金
美国国家卫生研究院;
关键词
Human endotoxemia; metabolomics; transcriptional profiling; SYSTEMIC INFLAMMATION; SEPSIS; MODEL; INFECTION; PROTEINS; GLUCOSE;
D O I
10.1097/SHK.0000000000000248
中图分类号
R4 [临床医学];
学科分类号
1002 ; 100602 ;
摘要
In this meta-study, we aimed to integrate biological insights gained from two levels of -omics analyses on the response to systemic inflammation induced by lipopolysaccharide in humans. We characterized the interplay between plasma metabolite compositions and transcriptional response of leukocytes through integration of transcriptomics with plasma metabonomics. We hypothesized that the drastic changes in the immediate environment of the leukocytes might have an adaptive effect on shaping their transcriptional response in conjunction with the initial inflammatory stimuli. Indeed, we observed that leukocytes, most notably, tune the activity of lipid-and protein-associated processes at the transcriptional level in accordance with the fluctuations in metabolite compositions of surrounding plasma. A closer look into the transcriptional control of only metabolic pathways uncovered alterations in bioenergetics and defenses against oxidative stress closely associated with mitochondrial dysfunction and shifts in energy production observed during inflammatory processes.
引用
收藏
页码:499 / 508
页数:10
相关论文
共 35 条
[1]   Human Endotoxemia as a model of systemic inflammation [J].
Andreasen, A. S. ;
Krabbe, K. S. ;
Krogh-Madsen, R. ;
Taudorf, S. ;
Pedersen, B. K. ;
Moller, K. .
CURRENT MEDICINAL CHEMISTRY, 2008, 15 (17) :1697-1705
[2]  
[Anonymous], IMMUNOLOGY OF AGING
[3]   Data-Driven Sample Size Determination for Metabolic Phenotyping Studies [J].
Blaise, Benjamin J. .
ANALYTICAL CHEMISTRY, 2013, 85 (19) :8943-8950
[4]   DEFINITIONS FOR SEPSIS AND ORGAN FAILURE AND GUIDELINES FOR THE USE OF INNOVATIVE THERAPIES IN SEPSIS [J].
BONE, RC ;
BALK, RA ;
CERRA, FB ;
DELLINGER, RP ;
FEIN, AM ;
KNAUS, WA ;
SCHEIN, RMH ;
SIBBALD, WJ .
CHEST, 1992, 101 (06) :1644-1655
[5]   Sir Isaac Newton, sepsis, SIRS, and CARS [J].
Bone, RC .
CRITICAL CARE MEDICINE, 1996, 24 (07) :1125-1128
[6]   A network-based analysis of systemic inflammation in humans [J].
Calvano, SE ;
Xiao, WZ ;
Richards, DR ;
Felciano, RM ;
Baker, HV ;
Cho, RJ ;
Chen, RO ;
Brownstein, BH ;
Cobb, JP ;
Tschoeke, SK ;
Miller-Graziano, C ;
Moldawer, LL ;
Mindrinos, MN ;
Davis, RW ;
Tompkins, RG ;
Lowry, SF .
NATURE, 2005, 437 (7061) :1032-1037
[7]   Experimental Human Endotoxemia: A Model of the Systemic Inflammatory Response Syndrome? [J].
Calvano, Steve E. ;
Coyle, Susette M. .
SURGICAL INFECTIONS, 2012, 13 (05) :293-299
[8]   Endotoxemia down-regulates bone marrow lymphopoiesis but stimulates myelopoiesis: the effect of G6PD deficiency [J].
Chandra, Rachna ;
Villanueva, Erika ;
Feketova, Eleonora ;
Machiedo, George W. ;
Hasko, Gyoergy ;
Deitch, Edwin A. ;
Spolarics, Zoltan .
JOURNAL OF LEUKOCYTE BIOLOGY, 2008, 83 (06) :1541-1550
[9]   Enrichr: interactive and collaborative HTML']HTML5 gene list enrichment analysis tool [J].
Chen, Edward Y. ;
Tan, Christopher M. ;
Kou, Yan ;
Duan, Qiaonan ;
Wang, Zichen ;
Meirelles, Gabriela Vaz ;
Clark, Neil R. ;
Ma'ayan, Avi .
BMC BIOINFORMATICS, 2013, 14
[10]   Integrated, Nontargeted Ultrahigh Performance Liquid Chromatography/Electrospray Ionization Tandem Mass Spectrometry Platform for the Identification and Relative Quantification of the Small-Molecule Complement of Biological Systems [J].
Evans, Anne M. ;
DeHaven, Corey D. ;
Barrett, Tom ;
Mitchell, Matt ;
Milgram, Eric .
ANALYTICAL CHEMISTRY, 2009, 81 (16) :6656-6667