H19 long noncoding RNA controls the mRNA decay promoting function of KSRP

被引:105
作者
Giovarelli, Matteo [1 ]
Bucci, Gabriele [2 ]
Ramos, Andres [3 ,4 ]
Bordo, Domenico [1 ]
Wilusz, Carol J. [5 ]
Chen, Ching-Yi [6 ]
Puppo, Margherita [1 ]
Briata, Paola [1 ]
Gherzi, Roberto [1 ]
机构
[1] Azienda Osped Univ San Martino IST, IRCCS, Gene Express Regulat Lab, I-16132 Genoa, Italy
[2] Osped San Raffaele, Ctr Translat Genom & Bioinformat, I-20132 Milan, Italy
[3] UCL, Inst Struct & Mol Biol, London WC1E 6BT, England
[4] Natl Inst Med Res, MRC, Mol Struct Div, London NW7 1AA, England
[5] Colorado State Univ, Dept Microbiol Immunol & Pathol, Ft Collins, CO 80523 USA
[6] Univ Alabama Birmingham, Dept Biochem & Mol Genet, Birmingham, AL 35233 USA
基金
英国医学研究理事会;
关键词
long noncoding RNA; mRNA decay; RNA-binding proteins; MUSCLE DIFFERENTIATION; BINDING PROTEIN; KH DOMAINS; GENE; HUR; MECHANISMS; STABILITY; TURNOVER; LNCRNAS; SITES;
D O I
10.1073/pnas.1415098111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Long noncoding RNAs (lncRNAs) interact with protein factors to regulate different layers of gene expression transcriptionally or posttranscriptionally. Here we report on the functional consequences of the unanticipated interaction of the RNA binding protein K homology-type splicing regulatory protein (KSRP) with the H19 lncRNA (H19). KSRP directly binds to H19 in the cytoplasm of undifferentiated multipotent mesenchymal C2C12 cells, and this interaction favors KSRP-mediated destabilization of labile transcripts such as myogenin. AKT activation induces KSRP dismissal from H19 and, as a consequence, myogenin mRNA is stabilized while KSRP is repurposed to promote maturation of myogenic microRNAs, thus favoring myogenic differentiation. Our data indicate that H19 operates as a molecular scaffold that facilitates effective association of KSRP with myogenin and other labile transcripts, and we propose that H19 works with KSRP to optimize an AKT-regulated posttranscriptional switch that controls myogenic differentiation.
引用
收藏
页码:E5023 / E5028
页数:6
相关论文
共 47 条
[1]   p38-dependent phosphorylation of the mRNA decay-promoting factor KSRP controls the stability of select myogenic transcripts [J].
Briata, P ;
Forcales, SV ;
Ponassi, M ;
Corte, G ;
Chen, CY ;
Karin, M ;
Puri, PL ;
Gherzi, R .
MOLECULAR CELL, 2005, 20 (06) :891-903
[2]   PI3K/AKT signaling determines a dynamic switch between distinct KSRP functions favoring skeletal myogenesis [J].
Briata, P. ;
Lin, W-J ;
Giovarelli, M. ;
Pasero, M. ;
Chou, C-F ;
Trabucchi, M. ;
Rosenfeld, M. G. ;
Chen, C-Y ;
Gherzi, R. .
CELL DEATH AND DIFFERENTIATION, 2012, 19 (03) :478-487
[3]   The Wnt/β-catenin→Pitx2 pathway controls the turnover of Pitx2 and other unstable mRNAs [J].
Briata, P ;
Ilengo, C ;
Corte, G ;
Moroni, C ;
Rosenfeld, MG ;
Chen, CY ;
Gherzi, R .
MOLECULAR CELL, 2003, 12 (05) :1201-1211
[4]   The imprinted H19 noncoding RNA is a primary microRNA precursor [J].
Cai, Xuezhong ;
Cullen, Bryan R. .
RNA, 2007, 13 (03) :313-316
[5]   Destabilization of nucleophosmin mRNA by the HuR/KSRP complex is required for muscle fibre formation [J].
Cammas, Anne ;
Sanchez, Brenda Janice ;
Lian, Xian Jin ;
Dormoy-Raclet, Virginie ;
van der Giessen, Kate ;
Lopez de Silanes, Isabel ;
Ma, Jennifer ;
Wilusz, Carol ;
Richardson, John ;
Gorospe, Myriam ;
Millevoi, Stefania ;
Giovarelli, Matteo ;
Gherzi, Roberto ;
Di Marco, Sergio ;
Gallouzi, Imed-Eddine .
NATURE COMMUNICATIONS, 2014, 5
[6]   The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones [J].
Cech, Thomas R. ;
Steitz, Joan A. .
CELL, 2014, 157 (01) :77-94
[7]   A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J].
Cesana, Marcella ;
Cacchiarelli, Davide ;
Legnini, Ivano ;
Santini, Tiziana ;
Sthandier, Olga ;
Chinappi, Mauro ;
Tramontano, Anna ;
Bozzoni, Irene .
CELL, 2011, 147 (02) :358-369
[8]   KSRP Ablation Enhances Brown Fat Gene Program in White Adipose Tissue Through Reduced miR-150 Expression [J].
Chou, Chu-Fang ;
Lin, Yi-Yu ;
Wang, Hsu-Kun ;
Zhu, Xiaolin ;
Giovarelli, Matteo ;
Briata, Paola ;
Gherzi, Roberto ;
Garvey, W. Timothy ;
Chen, Ching-Yi .
DIABETES, 2014, 63 (09) :2949-2961
[9]   The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression [J].
Derrien, Thomas ;
Johnson, Rory ;
Bussotti, Giovanni ;
Tanzer, Andrea ;
Djebali, Sarah ;
Tilgner, Hagen ;
Guernec, Gregory ;
Martin, David ;
Merkel, Angelika ;
Knowles, David G. ;
Lagarde, Julien ;
Veeravalli, Lavanya ;
Ruan, Xiaoan ;
Ruan, Yijun ;
Lassmann, Timo ;
Carninci, Piero ;
Brown, James B. ;
Lipovich, Leonard ;
Gonzalez, Jose M. ;
Thomas, Mark ;
Davis, Carrie A. ;
Shiekhattar, Ramin ;
Gingeras, Thomas R. ;
Hubbard, Tim J. ;
Notredame, Cedric ;
Harrow, Jennifer ;
Guigo, Roderic .
GENOME RESEARCH, 2012, 22 (09) :1775-1789
[10]   The H19 long noncoding RNA gives rise to microRNAs miR-675-3p and miR-675-5p to promote skeletal muscle differentiation and regeneration [J].
Dey, Bijan K. ;
Pfeifer, Karl ;
Dutta, Anindya .
GENES & DEVELOPMENT, 2014, 28 (05) :491-501