Optimized reverse primer for 16S-RFLP analysis and genomovar assignment of Flavobacterium columnare

被引：14
作者：
LaFrentz, B. R. [1 ]
Garcia, J. C. [1 ]
Dong, H. T. [2 ,3 ]
Waldbieser, G. C. [4 ]
Rodkhum, C. [2 ]
Wong, F. S. [5 ]
Chang, S. F. [5 ]
机构：
[1] ARS, USDA, Aquat Anim Hlth Res Unit, 990 Wire Rd, Auburn, AL 36832 USA
[2] Chulalongkorn Univ, Dept Vet Microbiol, Fac Vet Sci, Bangkok, Thailand
[3] King Mongkuts Univ Technol Thonburi, Dept Microbiol, Fac Sci, Bangkok, Thailand
[4] ARS, USDA, Warmwater Aquaculture Res Unit, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS USA
[5] MSD Anim Hlth Innovat Pte Ltd, MSD Anim Hlth, Singapore, Singapore
来源：
JOURNAL OF FISH DISEASES | 2017年 / 40卷 / 08期
关键词：
16S rRNA; columnaris disease; Flavobacterium columnare; genomovar; restriction fragment length polymorphism; CATFISH ICTALURUS-PUNCTATUS; GENETIC DIVERSITY; FISH; ASSOCIATION; CHALLENGE; VIRULENCE; TILAPIA;
D O I：
10.1111/jfd.12583
中图分类号：
S9 [水产、渔业];
学科分类号：
0908 ;
摘要：
[No abstract available]
引用
收藏
页码：1103 / 1108
页数：6
相关论文
共 15 条
  • [1] Genetic fingerprinting of Flavobacterium columnare isolates from cultured fish
    Arias, CR
    Welker, TL
    Shoemaker, CA
    Abernathy, JW
    Klesius, PH
    [J]. JOURNAL OF APPLIED MICROBIOLOGY, 2004, 97 (02) : 421 - 428
  • [2] Genetic diversity of Flavobacterium columnare examined by restriction fragment length polymorphism RNA gene and the and sequencing of the 16S ribosomal 16S-23S rDNA spacer
    Darwish, AM
    Ismaiel, AA
    [J]. MOLECULAR AND CELLULAR PROBES, 2005, 19 (04) : 267 - 274
  • [3] Columnaris disease in fish: a review with emphasis on bacterium-host interactions
    Declercq, Annelies Maria
    Haesebrouck, Freddy
    Van den Broeck, Wim
    Bossier, Peter
    Decostere, Annemie
    [J]. VETERINARY RESEARCH, 2013, 44
  • [4] ARCHAEA IN COASTAL MARINE ENVIRONMENTS
    DELONG, EF
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) : 5685 - 5689
  • [5] Phenotypic characterization and genetic diversity of Flavobacterium columnare isolated from red tilapia, Oreochromis sp., in Thailand
    Dong, H. T.
    LaFrentz, B.
    Pirarat, N.
    Rodkhum, C.
    [J]. JOURNAL OF FISH DISEASES, 2015, 38 (10) : 901 - 913
  • [6] Isolation and characterization of strains of Flavobacterium columnare from Brazil
    Figueiredo, HCP
    Klesius, PH
    Arias, CR
    Evans, J
    Shoemaker, CA
    Pereira, DJ
    Peixoto, MTD
    [J]. JOURNAL OF FISH DISEASES, 2005, 28 (04) : 199 - 204
  • [7] NCBIBLAST: a better web interface
    Johnson, Mark
    Zaretskaya, Irena
    Raytselis, Yan
    Merezhuk, Yuri
    McGinnis, Scott
    Madden, Thomas L.
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : W5 - W9
  • [8] Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment
    LaFrentz, B. R.
    Waldbieser, G. C.
    Welch, T. J.
    Shoemaker, C. A.
    [J]. JOURNAL OF FISH DISEASES, 2014, 37 (07) : 657 - 669
  • [9] Reproducible challenge model to investigate the virulence of Flavobacterium columnare genomovars in rainbow trout Oncorhynchus mykiss
    LaFrentz, B. R.
    LaPatra, S. E.
    Shoemaker, C. A.
    Klesius, P. H.
    [J]. DISEASES OF AQUATIC ORGANISMS, 2012, 101 (02) : 115 - 122
  • [10] Host-specific association between Flavobacterium columnare genomovars and fish species
    Olivares-Fuster, Oscar
    Baker, Jeffrey L.
    Terhune, Jeffery S.
    Shoemaker, Craig A.
    Klesius, Phillip H.
    Arias, Covadonga R.
    [J]. SYSTEMATIC AND APPLIED MICROBIOLOGY, 2007, 30 (08) : 624 - 633
12