Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114

被引:3
|
作者
Marian, Malek [1 ,3 ]
Fujikawa, Takashi [2 ]
Shimizu, Masafumi [1 ]
机构
[1] Gifu Univ, Fac Appl Biol Sci, Gifu 5011193, Japan
[2] Natl Agr & Food Res Org NARO, Inst Fruit Tree & Tea Sci, Tsukuba, Ibaraki 3058605, Japan
[3] Ibaraki Univ, Coll Agr, Inashiki, Ibaraki 3000393, Japan
基金
日本学术振兴会;
关键词
Genomics; Taxogenomics; Plant– bacteria interaction; Biocontrol-related genes; Plant colonization; TROPICI CIAT 899; SECRETION SYSTEM; STENOTROPHOMONAS-MALTOPHILIA; RALSTONIA-SOLANACEARUM; MASS-SPECTROMETRY; ROOT COLONIZATION; BACILLUS-CEREUS; PYTHIUM-ULTIMUM; REACTIVE OXYGEN; BACTERIAL WILT;
D O I
10.1007/s00203-021-02327-1
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Mitsuaria sp. TWR114 is a biocontrol agent against tomato bacterial wilt (TBW). We aimed to gain genomic insights relevant to the biocontrol mechanisms and colonization ability of this strain. The draft genome size was found to be 5,632,523 bp, with a GC content of 69.5%, assembled into 1144 scaffolds. Genome annotation predicted a total of 4675 protein coding sequences (CDSs), 914 pseudogenes, 49 transfer RNAs, 3 noncoding RNAs, and 2 ribosomal RNAs. Genome analysis identified multiple CDSs associated with various pathways for the metabolism and transport of amino acids and carbohydrates, motility and chemotactic capacities, protection against stresses (oxidative, antibiotic, and phage), production of secondary metabolites, peptidases, quorum-quenching enzymes, and indole-3-acetic acid, as well as protein secretion systems and their related appendages. The genome resource will extend our understanding of the genomic features related to TWR114's biocontrol and colonization abilities and facilitate its development as a new biopesticide against TBW.
引用
收藏
页码:3373 / 3388
页数:16
相关论文
共 7 条
  • [1] Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114
    Malek Marian
    Takashi Fujikawa
    Masafumi Shimizu
    Archives of Microbiology, 2021, 203 : 3373 - 3388
  • [2] Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene
    Yinghong Jin
    Junhui Wang
    Qian Liu
    Haifang Qiu
    Yangyang Wang
    Jiayi Zhou
    Jie Sun
    Peng Li
    Ruiping Wang
    Wenfei Zhang
    Brazilian Journal of Microbiology, 2020, 51 : 1145 - 1150
  • [3] Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene
    Jin, Yinghong
    Wang, Junhui
    Liu, Qian
    Qiu, Haifang
    Wang, Yangyang
    Zhou, Jiayi
    Sun, Jie
    Li, Peng
    Wang, Ruiping
    Zhang, Wenfei
    BRAZILIAN JOURNAL OF MICROBIOLOGY, 2020, 51 (03) : 1145 - 1150
  • [4] De novo genome sequence of endophytic biocontrol strain Bacillus sp. ST24 isolated from rice seed
    Khanal, Sabin
    Antony-Babu, Sanjay
    Zhou, Xin-Gen
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2023,
  • [5] Proteogenomic Analysis Provides Novel Insight into Genome Annotation and Nitrogen Metabolism in Nostoc sp. PCC 7120
    Yu, Shengchao
    Yang, Mingkun
    Xiong, Jie
    Zhang, Qi
    Gao, Xinxin
    Miao, Wei
    Ge, Feng
    MICROBIOLOGY SPECTRUM, 2021, 9 (02):
  • [6] Genome-Wide Expression Analysis Unravels Fluoroalkane Metabolism in Pseudomonas sp. Strain 273
    Xie, Yongchao
    Ramirez, Diana
    Chen, Gao
    He, Guang
    Sun, Yanchen
    Murdoch, Fadime Kara
    Loffler, Frank E.
    ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2023, 57 (42) : 15925 - 15935
  • [7] Complete Genome Sequence Analysis of Ralstonia solanacearum Strain PeaFJ1 Provides Insights Into Its Strong Virulence in Peanut Plants
    Tan, Xiaodan
    Dai, Xiaoqiu
    Chen, Ting
    Wu, Yushuang
    Yang, Dong
    Zheng, Yixiong
    Chen, Huilan
    Wan, Xiaorong
    Yang, Yong
    FRONTIERS IN MICROBIOLOGY, 2022, 13