Inter primer binding site (iPBS) polymorphism was investigated for common ivy (Hedera helix, L.) to obtain the knowledge on genetic diversity in this species. Actually, a very limited information exists about application of DNA markers in Hedera helix. Natural and planted European populations of ivy were analysed using an iPBS marker 5' ACCTGGCGTGCCA3' with a total number of 238 fragments generated. Of these, 86% were polymorphic. There were determined certain attributes of this marker such as the diversity index (DI) and polymorphism information content (PIC). The value of the diversity index was 0.79 and the polymorphic information index was 0.78. The proportion of polymorphisms of the individual amplified loci ranged from 0.32% to 6.98%. Cluster analysis was performed to determine the relationships among the European ivy populations where the distribution in the dendrogram under the habitat specifity was found for the used iPBS marker. We concluded that iPBS was very efficient in analysing the genetic diversity in Hedera helix, L. and that this marker can serve as a suitable tool to find genomically specific fingerprints relevant to the factors influencing the distribution of genetic variation.
机构:
Japan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
Katayama, Natsu
;
Kato, Masahiro
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Natl Museum Nat & Sci, Dept Bot, 4-1-1 Amakubo, Tsukuba, Ibaraki 3050005, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
Kato, Masahiro
;
Imaichi, Ryoko
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Japan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
机构:
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
机构:
Univ Tennessee, UT ORNL Grad Sch Genome Sci & Technol, Knoxville, TN 37996 USA
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
Sharma, Ritin
;
Pan, Chongle
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Oak Ridge Natl Lab, Comp Sci Math & BioSci Div, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
机构:
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
机构:
Japan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
Katayama, Natsu
;
Kato, Masahiro
论文数: 0引用数: 0
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机构:
Natl Museum Nat & Sci, Dept Bot, 4-1-1 Amakubo, Tsukuba, Ibaraki 3050005, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
Kato, Masahiro
;
Imaichi, Ryoko
论文数: 0引用数: 0
h-index: 0
机构:
Japan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, JapanJapan Womens Univ, Dept Chem & Biol Sci, Bunkyo Ku, 2-8-1 Mejirodai, Tokyo 1128681, Japan
机构:
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
机构:
Univ Tennessee, UT ORNL Grad Sch Genome Sci & Technol, Knoxville, TN 37996 USA
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
Sharma, Ritin
;
Pan, Chongle
论文数: 0引用数: 0
h-index: 0
机构:
Oak Ridge Natl Lab, Comp Sci Math & BioSci Div, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA
机构:
Oak Ridge Natl Lab, Div Chem Sci, Organ & Biol Mass Spectrometry Grp, Oak Ridge, TN 37831 USAUniv Tennessee, Dept Mech Aerosp & Biomed Engn, Knoxville, TN 37996 USA