Application of 1H-NMR Metabolomic Profiling for Reef-Building Corals

被引:30
作者
Sogin, Emilia M. [1 ,2 ]
Anderson, Paul [3 ]
Williams, Philip [2 ]
Chen, Chii-Shiarng [4 ]
Gates, Ruth D. [1 ]
机构
[1] Hawaii Inst Marine Biol, Kaneohe, HI 96744 USA
[2] Univ Hawaii Manoa, Honolulu, HI 96822 USA
[3] Coll Charleston, Charleston, SC 29401 USA
[4] Natl Museum Marine Biol & Aquarium, Checheng, Taiwan
基金
美国国家科学基金会;
关键词
ENVIRONMENTAL METABOLOMICS; IDENTIFICATION; SPECTRA; NMR; METABOLITES; ACCLIMATIZATION; BIOSYNTHESIS; TEMPERATURE; ORGANISMS; DIVERSITY;
D O I
10.1371/journal.pone.0111274
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In light of global reef decline new methods to accurately, cheaply, and quickly evaluate coral metabolic states are needed to assess reef health. Metabolomic profiling can describe the response of individuals to disturbance (i.e., shifts in environmental conditions) across biological models and is a powerful approach for characterizing and comparing coral metabolism. For the first time, we assess the utility of a proton-nuclear magnetic resonance spectroscopy (H-1-NMR)-based metabolomics approach in characterizing coral metabolite profiles by 1) investigating technical, intra-, and inter-sample variation, 2) evaluating the ability to recover targeted metabolite spikes, and 3) assessing the potential for this method to differentiate among coral species. Our results indicate H-1-NMR profiling of Porites compressa corals is highly reproducible and exhibits low levels of variability within and among colonies. The spiking experiments validate the sensitivity of our methods and showcase the capacity of orthogonal partial least squares discriminate analysis (OPLS-DA) to distinguish between profiles spiked with varying metabolite concentrations (0 mM, 0.1 mM, and 10 mM). Finally, H-1-NMR metabolomics coupled with OPLS-DA, revealed species-specific patterns in metabolite profiles among four reef-building corals (Pocillopora damicornis, Porites lobata, Montipora aequituberculata, and Seriatopora hystrix). Collectively, these data indicate that H-1-NMR metabolomic techniques can profile reef-building coral metabolomes and have the potential to provide an integrated picture of the coral phenotype in response to environmental change.
引用
收藏
页数:10
相关论文
共 65 条
[1]   Dynamic adaptive binning: an improved quantification technique for NMR spectroscopic data [J].
Anderson, Paul E. ;
Mahle, Deirdre A. ;
Doom, Travis E. ;
Reo, Nicholas V. ;
DelRaso, Nicholas J. ;
Raymer, Michael L. .
METABOLOMICS, 2011, 7 (02) :179-190
[2]   Genomic basis for coral resilience to climate change [J].
Barshis, Daniel J. ;
Ladner, Jason T. ;
Oliver, Thomas A. ;
Seneca, Francois O. ;
Traylor-Knowles, Nikki ;
Palumbi, Stephen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (04) :1387-1392
[3]  
Bharti SK, 2012, QUANTITATIVE ANAL CH, V35, P5
[4]   NMR-Based Microbial Metabolomics and the Temperature-Dependent Coral Pathogen Vibrio coralliilyticus [J].
Boroujerdi, Arezue F. B. ;
Vizcaino, Maria I. ;
Meyers, Alexander ;
Pollock, Elizabeth C. ;
Huynh, Sara Lien ;
Schock, Tracey B. ;
Morris, Pamela J. ;
Bearden, Daniel W. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2009, 43 (20) :7658-7664
[5]   Environmental metabolomics: a critical review and future perspectives [J].
Bundy, Jacob G. ;
Davey, Matthew P. ;
Viant, Mark R. .
METABOLOMICS, 2009, 5 (01) :3-21
[6]   Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis [J].
Burriesci, Matthew S. ;
Raab, Theodore K. ;
Pringle, John R. .
JOURNAL OF EXPERIMENTAL BIOLOGY, 2012, 215 (19) :3467-3477
[7]   OPLS discriminant analysis:: combining the strengths of PLS-DA and SIMCA classification [J].
Bylesjo, Max ;
Rantalainen, Mattias ;
Cloarec, Olivier ;
Nicholson, Jeremy K. ;
Holmes, Elaine ;
Trygg, Johan .
JOURNAL OF CHEMOMETRICS, 2006, 20 (8-10) :341-351
[8]   Historical Temperature Variability Affects Coral Response to Heat Stress [J].
Carilli, Jessica ;
Donner, Simon D. ;
Hartmann, Aaron C. .
PLOS ONE, 2012, 7 (03)
[9]   Coral bleaching - Capacity for acclimatization and adaptation [J].
Coles, SL ;
Brown, BE .
ADVANCES IN MARINE BIOLOGY, VOL 46, 2003, 46 :183-223