Genomics and Bioinformatics Resources for Crop Improvement

被引:99
作者
Mochida, Keiichi [1 ]
Shinozaki, Kazuo [1 ]
机构
[1] RIKEN, Plant Sci Ctr, Yokohama, Kanagawa 2300045, Japan
关键词
Bioinformatics; Database; Omics resource; EXPRESSED SEQUENCE TAGS; FULL-LENGTH CDNAS; LARGE-SCALE ANALYSIS; PLANT PROTEOME ANALYSIS; INDUCIBLE RNAI SYSTEM; MODEL DATA-ANALYSIS; FOX HUNTING SYSTEM; ARABIDOPSIS-THALIANA; HIGH-THROUGHPUT; FUNCTIONAL GENOMICS;
D O I
10.1093/pcp/pcq027
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Recent remarkable innovations in platforms for omics-based research and application development provide crucial resources to promote research in model and applied plant species. A combinatorial approach using multiple omics platforms and integration of their outcomes is now an effective strategy for clarifying molecular systems integral to improving plant productivity. Furthermore, promotion of comparative genomics among model and applied plants allows us to grasp the biological properties of each species and to accelerate gene discovery and functional analyses of genes. Bioinformatics platforms and their associated databases are also essential for the effective design of approaches making the best use of genomic resources, including resource integration. We review recent advances in research platforms and resources in plant omics together with related databases and advances in technology.
引用
收藏
页码:497 / 523
页数:27
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共 323 条
  • [81] Tag-based approaches for transcriptome research and genome annotation
    Harbers, M
    Carninci, P
    [J]. NATURE METHODS, 2005, 2 (07) : 495 - 502
  • [82] 5′-end SAGE for the analysis of transcriptional start sites
    Hashimoto, S
    Suzuki, Y
    Kasai, Y
    Morohoshi, K
    Yamada, T
    Sese, J
    Morishita, S
    Sugano, S
    Matsushima, K
    [J]. NATURE BIOTECHNOLOGY, 2004, 22 (09) : 1146 - 1149
  • [83] RIKEN mouse genome encyclopedia
    Hayashizaki, Y
    [J]. MECHANISMS OF AGEING AND DEVELOPMENT, 2003, 124 (01) : 93 - 102
  • [84] SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility
    Heesacker, Adam
    Kishore, Venkata K.
    Gao, Wenxiang
    Tang, Shunxue
    Kolkman, Judith M.
    Gingle, Alan
    Matvienko, Marta
    Kozik, Alexander
    Michelmore, Richard M.
    Lai, Zhao
    Rieseberg, Loren H.
    Knapp, Steven J.
    [J]. THEORETICAL AND APPLIED GENETICS, 2008, 117 (07) : 1021 - 1029
  • [85] European consortia building integrated resources for Arabidopsis functional genomics
    Hilson, P
    Small, I
    Kuiper, MTR
    [J]. CURRENT OPINION IN PLANT BIOLOGY, 2003, 6 (05) : 426 - 429
  • [86] Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
    Hirai, MY
    Yano, M
    Goodenowe, DB
    Kanaya, S
    Kimura, T
    Awazuhara, M
    Arita, M
    Fujiwara, T
    Saito, K
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (27) : 10205 - 10210
  • [87] Technical aspects of functional proteomics in plants
    Hirano, H
    Islam, N
    Kawasaki, H
    [J]. PHYTOCHEMISTRY, 2004, 65 (11) : 1487 - 1498
  • [88] Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis
    Hiratsu, K
    Matsui, K
    Koyama, T
    Ohme-Takagi, M
    [J]. PLANT JOURNAL, 2003, 34 (05) : 733 - 739
  • [89] BodyMap: a human and mouse gene expression database
    Hishiki, T
    Kawamoto, S
    Morishita, S
    Okubo, K
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 136 - 138
  • [90] Genome cluster database. A sequence family analysis platform for Arabidopsis and rice
    Horan, K
    Lauricha, J
    Bailey-Serres, J
    Raikhel, N
    Girke, T
    [J]. PLANT PHYSIOLOGY, 2005, 138 (01) : 47 - 54