Novel Gene Rearrangement in the Mitochondrial Genome of Three Garra and Insights Into the Phylogenetic Relationships of Labeoninae

被引:6
作者
Zhang, Chi [1 ]
Zhang, Kun [2 ]
Peng, Ying [2 ]
Zhou, Jianshe [1 ]
Liu, Yifan [2 ]
Liu, Bingjian [2 ]
机构
[1] Tibet Acad Agr & Anim Husb Sci, Inst Fisheries Sci, Lhasa, Peoples R China
[2] Zhejiang Ocean Univ, Natl Engn Lab Marine Germplasm Resources Explorat, Zhoushan, Peoples R China
基金
中国国家自然科学基金;
关键词
Garra; gene rearrangement; complete mtDNA sequence; Labeoninae; phylogeny; HIGHER TELEOSTEAN PHYLOGENIES; TSANGPO RIVER DRAINAGE; TRANSFER-RNA GENES; CYPRINIFORMES CYPRINIDAE; COMPLETE MITOGENOME; SOUTHEASTERN TIBET; CHINA TELEOSTEI; EVOLUTION; SEQUENCE; MODEL;
D O I
10.3389/fgene.2022.922634
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Complete mitochondrial genomes (mitogenomes) can provide valuable information for phylogenetic relationships, gene rearrangement, and molecular evolution. Here, we report the mitochondrial whole genomes of three Garra species and explore the mechanisms of rearrangements that occur in their mitochondrial genomes. The lengths of the mitogenomes' sequences of Garra dengba, Garra tibetana, and Garra yajiangensis were 16,876, 16,861, and 16,835, respectively. They contained 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNA genes, and two identical control regions (CRs). The mitochondrial genomes of three Garra species were rearranged compared to other fish mitochondrial genomes. The tRNA-Thr, tRNA-Pro and CR (T-P-CR) genes undergo replication followed by random loss of the tRNA-Thr and tRNA-Pro genes to form tRNA-Thr, CR1, tRNA-Pro and CR2 (T-CR-P-CR). Tandem duplication and random loss best explain this mitochondrial gene rearrangement. These results provide a foundation for future characterization of the mitochondrial gene arrangement of Labeoninae and further phylogenetic studies.
引用
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页数:14
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