Long-lived macrophage reprogramming drives spike protein-mediated inflammasome activation in COVID-19

被引:97
作者
Theobald, Sebastian J. [1 ,2 ,3 ,4 ]
Simonis, Alexander [1 ,2 ,3 ,4 ]
Georgomanolis, Theodoros [3 ,5 ]
Kreer, Christoph [2 ,6 ]
Zehner, Matthias [2 ,6 ]
Eisfeld, Hannah S. [1 ,2 ,3 ,4 ]
Albert, Marie-Christine [7 ,8 ]
Chhen, Jason [1 ,2 ,3 ,4 ]
Motameny, Susanne [3 ,5 ]
Erger, Florian [3 ,5 ,9 ]
Fischer, Julia [1 ,2 ,3 ,4 ,10 ]
Malin, Jakob J. [1 ,2 ,3 ,4 ]
Graeb, Jessica [1 ,2 ,3 ,4 ]
Winter, Sandra [1 ,2 ,3 ,4 ]
Pouikli, Andromachi [11 ]
David, Friederike [3 ,5 ]
Boell, Boris [1 ,2 ]
Koehler, Philipp [1 ,2 ,3 ,4 ,7 ]
Vanshylla, Kanika [2 ,6 ]
Gruell, Henning [2 ,6 ]
Suarez, Isabelle [1 ,2 ,10 ]
Hallek, Michael [1 ,2 ]
Faetkenheuer, Gerd [1 ,2 ,10 ]
Jung, Norma [1 ,2 ,10 ]
Cornely, Oliver A. [1 ,2 ,3 ,4 ,7 ,10 ]
Lehmann, Clara [1 ,2 ,3 ,4 ,10 ]
Tessarz, Peter [7 ,11 ]
Altmueller, Janine [3 ,5 ]
Nuernberg, Peter [3 ,4 ,5 ]
Kashkar, Hamid [7 ,8 ]
Klein, Florian [2 ,6 ,10 ]
Koch, Manuel [12 ,13 ]
Rybniker, Jan [1 ,2 ,3 ,4 ,10 ]
机构
[1] Univ Cologne, Fac Med, Dept Internal Med 1, Cologne, Germany
[2] Univ Cologne, Univ Hosp Cologne, Cologne, Germany
[3] Univ Cologne, Fac Med, Cologne, Germany
[4] Univ Cologne, Univ Hosp Cologne, Ctr Mol Med Cologne CMMC, Cologne, Germany
[5] Univ Cologne, Univ Hosp Cologne, Cologne Ctr Genom CCG, Cologne, Germany
[6] Univ Cologne, Fac Med, Inst Virol, Lab Expt Immunol, Cologne, Germany
[7] Univ Cologne, Excellence Cluster Cellular Stress Responses Agin, Cologne, Germany
[8] Univ Cologne, Inst Med Microbiol Immunol & Hyg IMMIH, Cologne, Germany
[9] Univ Hosp Cologne, Fac Med, Inst Human Genet, Cologne, Germany
[10] German Ctr Infect Res DZIF, Partner Site Bonn Cologne, Cologne, Germany
[11] Max Planck Inst Biol Ageing, Max Planck Res Grp Chromatin & Ageing, Cologne, Germany
[12] Univ Cologne, Med Fac, Inst Dent Res & Oral Musculoskeletal Biol, Cologne, Germany
[13] Univ Cologne, Med Fac, Ctr Biochem, Cologne, Germany
关键词
inflammasome; innate immunity; macrophage; NLRP3; SARS-CoV-2; NLRP3; INFLAMMASOME; INDUCTION; INFECTION; RECOGNITION; EXPRESSION; IMMUNITY; NEK7;
D O I
10.15252/emmm.202114150
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Innate immunity triggers responsible for viral control or hyperinflammation in COVID-19 are largely unknown. Here we show that the SARS-CoV-2 spike protein (S-protein) primes inflammasome formation and release of mature interleukin-1 beta (IL-1 beta) in macrophages derived from COVID-19 patients but not in macrophages from healthy SARS-CoV-2 naive individuals. Furthermore, longitudinal analyses reveal robust S-protein-driven inflammasome activation in macrophages isolated from convalescent COVID-19 patients, which correlates with distinct epigenetic and gene expression signatures suggesting innate immune memory after recovery from COVID-19. Importantly, we show that S-protein-driven IL-1 beta secretion from patient-derived macrophages requires non-specific monocyte pre-activation in vivo to trigger NLRP3-inflammasome signaling. Our findings reveal that SARS-CoV-2 infection causes profound and long-lived reprogramming of macrophages resulting in augmented immunogenicity of the SARS-CoV-2 S-protein, a major vaccine antigen and potent driver of adaptive and innate immune signaling.
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页数:20
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共 58 条
  • [1] Differential peak calling of ChIP-seq signals with replicates with THOR
    Allhoff, Manuel
    Sere, Kristin
    Pires, Juliana F.
    Zenke, Martin
    Costa, Ivan G.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (20) : e153
  • [2] BCG Vaccination Protects against Experimental Viral Infection in Humans through the Induction of Cytokines Associated with Trained Immunity
    Arts, Rob J. W.
    Moorlag, Simone J. C. F. M.
    Novakovic, Boris
    Li, Yang
    Wang, Shuang-Yin
    Oosting, Marije
    Kumar, Vinod
    Xavier, Ramnik J.
    Wijmenga, Cisca
    Joosten, Leo A. B.
    Reusken, Chantal B. E. M.
    Benn, Christine S.
    Aaby, Peter
    Koopmans, Marion P.
    Stunnenberg, Hendrik G.
    van Crevel, Reinout
    Netea, Mihai G.
    [J]. CELL HOST & MICROBE, 2018, 23 (01) : 89 - +
  • [3] Innate sensing of viruses by toll-like receptors
    Boehme, KW
    Compton, T
    [J]. JOURNAL OF VIROLOGY, 2004, 78 (15) : 7867 - 7873
  • [4] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [5] Inflammasomes: mechanism of assembly, regulation and signalling
    Broz, Petr
    Dixit, Vishva M.
    [J]. NATURE REVIEWS IMMUNOLOGY, 2016, 16 (07) : 407 - 420
  • [6] Interleukin-1 blockade with high-dose anakinra in patients with COVID-19, acute respiratory distress syndrome, and hyperinflammation: a retrospective cohort study
    Cavalli, Giulio
    De Luca, Giacomo
    Campochiaro, Corrado
    Della-Torre, Emanuel
    Ripa, Marco
    Canetti, Diana
    Oltolini, Chiara
    Castiglioni, Barbara
    Din, Chiara Tassan
    Boffini, Nicola
    Tomelleri, Alessandro
    Farina, Nicola
    Ruggeri, Annalisa
    Rovere-Querini, Patrizia
    Di Lucca, Giuseppe
    Martinenghi, Sabina
    Scotti, Raffaella
    Tresoldi, Moreno
    Ciceri, Fabio
    Landoni, Giovanni
    Zangrillo, Alberto
    Scarpellini, Paolo
    Dagna, Lorenzo
    [J]. LANCET RHEUMATOLOGY, 2020, 2 (06) : E325 - E331
  • [7] NEK7 interacts with NLRP3 to modulate the pyroptosis in inflammatory bowel disease via NF-κB signaling
    Chen, Xueliang
    Liu, Ganglei
    Yuan, Yuanyuan
    Wu, Guotao
    Wang, Shalong
    Yuan, Lianwen
    [J]. CELL DEATH & DISEASE, 2019, 10 (12)
  • [8] BCG Vaccination in Humans Elicits Trained Immunity via the Hematopoietic Progenitor Compartment
    Cirovic, Branko
    de Bree, L. Charlotte J.
    Groh, Laszlo
    Blok, Bas A.
    Chan, Joyce
    van der Velden, Walter J. F. M.
    Bremmers, M. E. J.
    van Crevel, Reinout
    Handler, Kristian
    Picelli, Simone
    Schulte-Schrepping, Jonas
    Klee, Kathrin
    Oosting, Marije
    Koeken, Valerie A. C. M.
    van Ingen, Jakko
    Li, Yang
    Benn, Christine S.
    Schultze, Joachim L.
    Joosten, Leo A. B.
    Curtis, Nigel
    Netea, Mihai G.
    Schlitzer, Andreas
    [J]. CELL HOST & MICROBE, 2020, 28 (02) : 322 - +
  • [9] A small-molecule inhibitor of the NLRP3 inflammasome for the treatment of inflammatory diseases
    Coll, Rebecca C.
    Robertson, Avril A. B.
    Chae, Jae Jin
    Higgins, Sarah C.
    Munoz-Planillo, Raul
    Inserra, Marco C.
    Vetter, Irina
    Dungan, Lara S.
    Monks, Brian G.
    Stutz, Andrea
    Croker, Daniel E.
    Butler, Mark S.
    Haneklaus, Moritz
    Sutton, Caroline E.
    Nunez, Gabriel
    Latz, Eicke
    Kastner, Daniel L.
    Mills, Kingston H. G.
    Masters, Seth L.
    Schroder, Kate
    Cooper, Matthew A.
    O'Neill, Luke A. J.
    [J]. NATURE MEDICINE, 2015, 21 (03) : 248 - +
  • [10] MicroRNAs as Molecular Switches in Macrophage Activation
    Curtale, Graziella
    Rubino, Marcello
    Locati, Massimo
    [J]. FRONTIERS IN IMMUNOLOGY, 2019, 10