Genome-wide analysis reveals four key transcription factors associated with cadmium stress in creeping bentgrass (Agrostis stolonifera L.)

被引:28
作者
Yuan, Jianbo [1 ,2 ]
Bai, Yuqing [3 ]
Chao, Yuehui [2 ]
Sun, Xinbo [4 ]
He, Chunyan [2 ]
Liang, Xiaohong [2 ]
Xie, Lijuan [1 ]
Han, Liebao [2 ]
机构
[1] Shenzhen Polytech, Sch Appl Chem & Biotechnol, Shenzhen, Peoples R China
[2] Beijing Forestry Univ, Turfgrass Res Inst, Coll Forestry, Beijing, Peoples R China
[3] Wutong Mt Natl Pk, Adm Off, Shenzhen, Peoples R China
[4] Hebei Agr Univ, Key Lab Crop Growth Regulat Hebei Prov, Baoding, Hebei, Peoples R China
来源
PEERJ | 2018年 / 6卷
关键词
Cadmium; Creeping bentgrass; Transcription factors; RNA-Seq; PROTEIN-KINASE GENE; MAIZE ZEA-MAYS; ABSCISIC-ACID; TRANSGENIC EXPRESSION; REGULATORY NETWORKS; DROUGHT TOLERANCE; RICE; OVEREXPRESSION; ACCUMULATION; IRON;
D O I
10.7717/peerj.5191
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cadmium (Cd) toxicity seriously affects the growth and development of plants, so studies on uptake, translocation, and accumulation of Cd in plants are crucial for phytoremediation. However, the molecular mechanism of the plant response to Cd stress remains poorly understood. The main objective of this study was to reveal differentially expressed genes (DEGs) under lower (BT2-5) and higher (BT43) Cd concentration treatments in creeping bentgrass. A total of 463,184 unigenes were obtained from creeping bentgrass leaves using RNA sequencing technology. Observation of leaf tissue morphology showed that the higher Cd concentration damages leaf tissues. Four key transcription factor (TF) families, WRKY, bZIP, ERF, and MYB, are associated with Cd stress in creeping bentgrass. Our findings revealed that these four TFs play crucial roles during the creeping bentgrass response to Cd stress. This study is mainly focused on the molecular characteristics of DEGs under Cd stress using transcriptomic analysis in creeping bentgrass. These results provide novel insight into the regulatory mechanisms of respond to Cd stress and enrich information for phytoremediation.
引用
收藏
页数:22
相关论文
共 75 条
[1]   Novel rice MAP kinases OsMSRMK3 and OsWJUMK1 involved in encountering diverse environmental stresses and developmental regulation [J].
Agrawal, GK ;
Agrawal, SK ;
Shibato, J ;
Iwahashi, H ;
Rakwal, R .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2003, 300 (03) :775-783
[2]   Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues [J].
Agrawal, GK ;
Rakwal, R ;
Iwahashi, H .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2002, 294 (05) :1009-1016
[3]   Differential expression analysis for sequence count data [J].
Anders, Simon ;
Huber, Wolfgang .
GENOME BIOLOGY, 2010, 11 (10)
[4]   Protective Effects of Mesenchymal Stem Cells with CXCR4 Up-Regulation in a Rat Renal Transplantation Model [J].
Cao, Zhiqiang ;
Zhang, Geng ;
Wang, Fuli ;
Liu, Hongbao ;
Liu, Long ;
Han, Yaling ;
Zhang, Jian ;
Yuan, Jianlin .
PLOS ONE, 2013, 8 (12)
[5]   The role of WRKY transcription factors in plant abiotic stresses [J].
Chen, Ligang ;
Song, Yu ;
Li, Shujia ;
Zhang, Liping ;
Zou, Changsong ;
Yu, Diqiu .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2012, 1819 (02) :120-128
[6]  
Chen X, 2011, BOT STUD, V52, P41
[7]   Transgenic expression of DwMYB2 impairs iron transport from root to shoot in Arabidopsis thaliana [J].
Chen, Yan-Hong ;
Wu, Xue-Min ;
Ling, Hong-Qing ;
Yang, Wei-Cai .
CELL RESEARCH, 2006, 16 (10) :830-840
[8]   ABFs, a family of ABA-responsive element binding factors [J].
Choi, HI ;
Hong, JH ;
Ha, JO ;
Kang, JY ;
Kim, SY .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (03) :1723-1730
[9]   Regulatory networks of cadmium stress in plants [J].
DalCorso, Giovanni ;
Farinati, Silvia ;
Furini, Antonella .
PLANT SIGNALING & BEHAVIOR, 2010, 5 (06) :663-667
[10]   Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens [J].
De Mortel, Judith E. Van ;
Schat, Henk ;
Moerland, Perry D. ;
Van Themaat, Emiel Ver Loren ;
Van der Ent, Sjoerd ;
Blankestijn, Hetty ;
Ghandilyan, Artak ;
Tsiatsiani, Styliani ;
Aarts, Mark G. M. .
PLANT CELL AND ENVIRONMENT, 2008, 31 (03) :301-324