AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

被引：88
|
作者：
Legeai, F. [1 ,2 ]
Shigenobu, S. [3 ,4 ,5 ]
Gauthier, J. -P. [2 ]
Colbourne, J. [6 ,7 ]
Rispe, C. [2 ]
Collin, O.
Richards, S. [8 ]
Wilson, A. C. C. [9 ]
Murphy, T. [10 ]
Tagu, D. [2 ]
机构：
[1] INRIA, Equipe Symbiose, Ctr Rennes Bretagne Atlantique, F-35042 Rennes, France
[2] INRA, UMR, Le Rheu, France
[3] Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA
[4] JST, PRESTO, Saitama, Japan
[5] Natl Inst Nat Sci, Okazaki Inst Integrat Biosci, Okazaki, Aichi 4448787, Japan
[6] Indiana Univ, Ctr Genom & Bioinformat, Sch Informat, Bloomington, IN 47405 USA
[7] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
[8] Baylor Coll Med, Human Genome Sequencing Ctr, Dept Mol & Human Genet, Houston, TX 77030 USA
[9] Univ Miami, Dept Biol, Coral Gables, FL 33124 USA
[10] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA
来源：
INSECT MOLECULAR BIOLOGY | 2010年 / 19卷
关键词：
AphidBase; pea aphid genome; annotation; manual curation; GMOD; COMMUNITY ANNOTATION; GENE PREDICTION; PROGRAM; DATABASE; MODEL; RNA; SEQUENCE;
D O I：
10.1111/j.1365-2583.2009.00930.x
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at http://www.aphidbase.com.
引用
收藏
页码：5 / 12
页数：8
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