共 66 条
Combining prediction, computation and experiment for the characterization of protein disorder
被引:98
作者:

Bracken, C
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Iakoucheva, LM
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Rorner, PR
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Dunker, AK
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA
机构:
[1] Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA
[2] Rockefeller Univ, Lab Stat Genet, New York, NY 10021 USA
[3] Indiana Univ, Sch Med, Ctr Computat Biol & Bioinformat, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA
[4] Indiana Univ, Sch Informat, Indianapolis, IN 46202 USA
[5] Indiana Univ, Emerging Technol Ctr, Mol Kinet Inc, Indianapolis, IN 46202 USA
关键词:
D O I:
10.1016/j.sbi.2004.08.003
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Several computational and experimental methods exist for identifying disordered residues within proteins. Computational algorithms can now identify these disordered sequences and predict their occurrence within genomes with relatively high accuracy. Recent advances in NMR and mass spectroscopy permit faster and more detailed studies of disordered states at atomic resolutions. Combining prediction, computation and experimentation is proposed to accelerate and enhance the characterization of intrinsically disordered protein.
引用
收藏
页码:570 / 576
页数:7
相关论文
共 66 条
[1]
1H-NMR parameters of common amino acid residues measured in aqueous solutions of the linear tetrapeptides Gly-Gly-X-Ala at pressures between 0.1 and 200 MPa
[J].
Arnold, MR
;
Kremer, W
;
Lüdemann, HD
;
Kalbitzer, HR
.
BIOPHYSICAL CHEMISTRY,
2002, 96 (2-3)
:129-140

Arnold, MR
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany

Kremer, W
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany

Lüdemann, HD
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany

论文数: 引用数:
h-index:
机构:
[2]
Weak alignment offers new NMR opportunities to study protein structure and dynamics
[J].
Bax, A
.
PROTEIN SCIENCE,
2003, 12 (01)
:1-16

Bax, A
论文数: 0 引用数: 0
h-index: 0
机构:
NIDDK, Chem Phys Lab, NIH, Bethesda, MD 20892 USA NIDDK, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
[3]
The C-terminal domain of measles virus nucleoprotein belongs to the class of intrinsically disordered proteins that fold upon binding to their physiological partner
[J].
Bourhis, JM
;
Johansson, K
;
Receveur-Bréchot, V
;
Oldfield, CJ
;
Dunker, KA
;
Canard, B
;
Longhi, S
.
VIRUS RESEARCH,
2004, 99 (02)
:157-167

Bourhis, JM
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Johansson, K
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Receveur-Bréchot, V
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Oldfield, CJ
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Dunker, KA
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Canard, B
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France

Longhi, S
论文数: 0 引用数: 0
h-index: 0
机构: UMR 6098 CNRS, F-13288 Marseille 09, France
[4]
NMR spin relaxation methods for characterization of disorder and folding in proteins
[J].
Bracken, C
.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING,
2001, 19 (01)
:3-12

Bracken, C
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA
[5]
Backbone dynamics of the natively unfolded pro-peptide of subtilisin by heteronuclear NMR relaxation studies
[J].
Buevich, AV
;
Shinde, UP
;
Inouye, M
;
Baum, J
.
JOURNAL OF BIOMOLECULAR NMR,
2001, 20 (03)
:233-249

Buevich, AV
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Shinde, UP
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Inouye, M
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Baum, J
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA
[6]
Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E
[J].
Callaghan, AJ
;
Aurikko, JP
;
IIag, LL
;
Grossmann, JG
;
Chandran, V
;
Kühnel, K
;
Poljak, L
;
Carpousis, AJ
;
Robinson, CV
;
Symmons, MF
;
Luisi, BF
.
JOURNAL OF MOLECULAR BIOLOGY,
2004, 340 (05)
:965-979

Callaghan, AJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Aurikko, JP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

IIag, LL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Grossmann, JG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Chandran, V
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Kühnel, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Poljak, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Carpousis, AJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Robinson, CV
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Symmons, MF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England

Luisi, BF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England
[7]
Helix formation and the unfolded state of a 52-residue helical protein
[J].
Cao, W
;
Bracken, C
;
Kallenbach, NR
;
Lu, M
.
PROTEIN SCIENCE,
2004, 13 (01)
:177-189

Cao, W
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA

Bracken, C
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA

Kallenbach, NR
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA

Lu, M
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Weill Med Coll, Dept Biochem, New York, NY 10021 USA
[8]
Probing residual interactions in unfolded protein states using NMR spin relaxation techniques:: An application to Δ131Δ
[J].
Choy, WY
;
Kay, LE
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003, 125 (39)
:11988-11992

Choy, WY
论文数: 0 引用数: 0
h-index: 0
机构: Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada

Kay, LE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[9]
Side chain dynamics in unfolded protein states:: an NMR based 2H spin relaxation study of Δ131Δ
[J].
Choy, WY
;
Shortle, D
;
Kay, LE
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003, 125 (07)
:1748-1758

Choy, WY
论文数: 0 引用数: 0
h-index: 0
机构: Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada

Shortle, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada

Kay, LE
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[10]
Calculation of ensembles of structures representing the unfolded state of an SH3 domain
[J].
Choy, WY
;
Forman-Kay, JD
.
JOURNAL OF MOLECULAR BIOLOGY,
2001, 308 (05)
:1011-1032

Choy, WY
论文数: 0 引用数: 0
h-index: 0
机构: Hosp Sick Children, Toronto, ON M5G 1X8, Canada

Forman-Kay, JD
论文数: 0 引用数: 0
h-index: 0
机构: Hosp Sick Children, Toronto, ON M5G 1X8, Canada