Interstrand distance distribution of DNA near melting

被引:18
作者
Baiesi, M [1 ]
Carlon, E
Kafri, Y
Mukamel, D
Orlandini, E
Stella, AL
机构
[1] Univ Padua, Dipartimento Fis, INFM, I-35131 Padua, Italy
[2] Univ Saarland, D-66041 Saarbrucken, Germany
[3] Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
[4] Univ Padua, Sez INFN, I-35131 Padua, Italy
来源
PHYSICAL REVIEW E | 2003年 / 67卷 / 02期
关键词
D O I
10.1103/PhysRevE.67.021911
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The distance distribution between complementary base pairs of the two strands of a DNA molecule is studied near the melting transition. Scaling arguments are presented for a generalized Poland-Scheraga-type model that includes self-avoiding interactions. At the transition temperature and for a large distance r, the distribution decays as 1/r(kappa) with kappa=1+(c-2)/nu. Here nu is the self-avoiding walk correlation length exponent and c is the exponent associated with the entropy of an open loop in the chain. Results for the distribution function just below the melting point are also presented. Numerical simulations that fully take into account the self-avoiding interactions are in good agreement with the scaling approach.
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页数:6
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